RNA id: TU596687


Basic Information

Item Value
RNA id TU596687
length 1859
RNA type TUCP
GC content 0.44
exon number 2
gene id G526547
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58110906 ~ 58112819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAAATGTACTTTAATGTTCTCTGCACAACACCATGACAAAATGTGGGAAATTGCTTTAAATTGCATTAaacctgcaacattttctctccgccAACAAGAGGAGTGTGAACAGTttttgtcatgaacagtgcttgtgccaaTATAAAGTGGGGaggggatgttccccaatgctggaaagGGGGCCTGAGTAAAAGAGTTTGGGAACCTCTGCTCTACCACACATCACCTAGGCCTATCCCTCCTGCTAGTGTTGGCATTCCAGGCAGCCAGGCTATGTTGACCTAATCTGTCCTCATCAAGCTGGGTAAACAGGAGTGTGTGGTGTTCATTAGTCTGCCGGACTCATTAACCACCTGCTTCTAATTATCGCTAATCATGCCTCGTCTTGGATGTCTCTGGCTCTGCCGTCACTGCAGTGGTGGGCTCTAGACAGAACATGGCTGACATGTTGGCAAAATTGATGGAAGCTTCAACCTTCTagaacagggatgggcaactttaatGGTGACAACTCGTGACAGCGAAGATAAACATTTgaagttttaaagttaatttcctgcccTTCTGCACATCTTGCTGtggggcgtagagaaaatgtttttgttttataactcatttcatgcaattctacaaaaTTTGCCATCGGGCAGAACTATTTttattacacattttgccaaCGGGTGGAGGAAAATGTTTGCCGTTTTTAATATTGATAACTGATGATCAACGGGCCCGTTTGGTCATTTGACCATGCTTACTACAAGTTTTAGATCGTCTTTCGGCCGGCTAACTTACCAATAAGAAAAAACATGTAATGGGCTAATTGTGTGActtctgatgcacaaccaaatatctaaattgtgtattgtattactctaactctcaacagtaagttgagaccctgagTTTCCCCCGAAAATAATTCAAATTGGTCCGCGTGCCTTCAAAAATGGGGGGCCGCCAGTTACCCATCCCTGTTCTAGAATCTAGAAATCACTACTCTGAAAAAACTCAAAGAGAAGCGTCCAGATAGCCCATCACAGGCTAGCTAGCCGACATCATATCTCAATGGTCTGTCATGTTGTCATGAAATGGGCTTTTAACCAGACATGTCCCTACCTTCTTATGTGGTTGTGGACAGGGTTTGTGGTAAGGCCTTTGCACGAGCCCAAACTCACCAAGAAGAAAAGCAAACAAATagtgggaagagaggaggaggtcaGAGCTTTGATGTCAGGTCCTCTGGAGGTTGGCTTGTTTGCCCTAGTCTGTTTCCAGTAAACATGATGCTTGAGTGTGTGGAGTGTcaacaccagtgtgtgtgtgtgtgtgtgtgtgtgtactctattAGCACAGAACCACAGAACAAACCCAGGGGGAAATGCCTAGAACGGTGCCATGCCTTGATCACCGTAGTTATCTTCCTGATTGCATTTTATTATGACGTTGGAAAACATGCCATTTTTTATTCTTCTCAAAAACACATGTTTCTCCCGCTGCCCTTCGGGTAGAATAACAGttctccattccattccattccgcAGTGTGAGCATGATTTCTCAGTCAAGACTTGCATGCCCCGGGGAGAGCTAATAACCCTTATCTGAAATGACCATCACCAGGATGCATCAGCAGGAAATCTTCATTCACGCTTATCGGCCGGAAGACCTGAGGGTCTCAGAAAACACACAACCTCGACACCTTCCAACTGATTGCAACAGTCAGGTAATTATGTAACGTCAAGATTAAATTGTTGCTATAGCTATTCGGGAGAGAATTGACccaatgcaacaacaacaaaaacacaaggGCAGGCCTTGTCTAAAAATTGGTTTCACACATTTGAGAGAATCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596684 lncRNA upstream 4169 58106525 ~ 58106737 (+) True G526544
TU596682 lncRNA upstream 5582 58105073 ~ 58105324 (+) True G526542
TU596678 lncRNA upstream 9413 58101255 ~ 58101493 (+) True G526538
TU596676 lncRNA upstream 12730 58097930 ~ 58098176 (+) True G526536
TU596652 lncRNA upstream 27513 58081003 ~ 58083393 (+) True G526512
TU596721 lncRNA downstream 31803 58144622 ~ 58146334 (+) True G526574
TU596728 lncRNA downstream 46517 58159336 ~ 58159886 (+) True G526581
TU596729 lncRNA downstream 50926 58163745 ~ 58164057 (+) True G526582
TU596736 lncRNA downstream 67341 58180160 ~ 58180369 (+) True G526589
TU596738 lncRNA downstream 68767 58181586 ~ 58181789 (+) True G526591
XM_021607011.2 mRNA upstream 167222 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 174640 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 189836 57916345 ~ 57921070 (+) True fgf3
XM_036980581.1 mRNA upstream 247150 57842994 ~ 57863756 (+) False LOC110526223
XM_036980583.1 mRNA upstream 247150 57842994 ~ 57863756 (+) False LOC110526223
XM_021607019.2 mRNA downstream 39021 58151840 ~ 58158582 (+) True LOC110526232
XM_036980591.1 mRNA downstream 106070 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 106735 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 106735 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 107477 58220296 ~ 58228939 (+) False LOC110526234
TU596076 other upstream 292626 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 400566 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 468424 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 483287 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 504539 57604108 ~ 57606367 (+) True G525861
TU596784 other downstream 159260 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 206101 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 665904 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1658889 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3858917 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile