RNA id: TU599876


Basic Information

Item Value
RNA id TU599876
length 390
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G529575
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60497604 ~ 60497993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTATCTCTTTTAATGACAAAAATAAGTCACATTAAAGAGGATTTGCCTTtgacatttaaattacaggtgtCCAAAGCAAATATGACATATTTAATATAATGTCACCAATAAtgaaacaaaagacaaaacaatatGCATTTAAATTAAGATGGTACACAAGCATTATAAATATAAATGTGCAAGGCCTTCTCCCAAAGTCTTAAGCATGATACAAAATATATTGAACATTATGTTCCAATGGCATCTAGACTTAAATAAACAATGTTTACTAGCACTACAAGCCAATAACATTATAGAAGCCAGTTACAATGCTAGGATGGCCCTCCATGCTTCAACATATTTATGCCCTTTTTTAATAGAAATGTTTTGCATTTGCTACCGACAGCTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599873 lncRNA upstream 3463 60493942 ~ 60494141 (+) True G529573
TU599871 lncRNA upstream 4627 60492773 ~ 60492977 (+) True G529571
TU599870 lncRNA upstream 5130 60492257 ~ 60492474 (+) True G529570
TU599862 lncRNA upstream 13142 60484262 ~ 60484462 (+) True G529562
TU599861 lncRNA upstream 15419 60481976 ~ 60482185 (+) True G529561
TU599874 lncRNA downstream 154 60498147 ~ 60499184 (+) True G529574
TU599877 lncRNA downstream 3896 60501889 ~ 60504820 (+) True G529576
TU599899 lncRNA downstream 36900 60534893 ~ 60535096 (+) True G529592
TU599832 lncRNA downstream 42746 60540739 ~ 60540954 (+) True G529537
TU599837 lncRNA downstream 45736 60543729 ~ 60560821 (+) False G529539
XR_005052179.1 mRNA upstream 45334 60448606 ~ 60452270 (+) False LOC110526265
XM_021607080.2 mRNA downstream 9966 60507959 ~ 60525243 (+) True LOC110526268
XM_036980624.1 mRNA downstream 173715 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 173720 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 173720 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 317590 60815583 ~ 60863460 (+) False LOC110526274
TU598912 other upstream 725520 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1718587 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2125636 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2224768 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2384785 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1473743 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1651780 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2322427 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2514265 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2534938 63032931 ~ 63198734 (+) False G532237

Expression Profile