RNA id: TU601084



Basic Information


Item Value
RNA id TU601084
length 222
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G530732
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61343787 ~ 61344008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacacacacacacacacacgcacacagagctttgtttttgtaaaatgtctgGACATTTTGGAGTgtaaaacccttaaccctaaccatagccctaaccctaagcatgatggggtgtttattgcttaattaactcaggaaccacacctgtatggaagcacctgctttcaatatactttgtattccTCAATTTACTCAAGTATAGTTGTTTGAGTAAATTAcggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU600819 lncRNA upstream 14607 61328964 ~ 61329180 (+) True G530479
TU600810 lncRNA upstream 22818 61320645 ~ 61320969 (+) True G530470
TU600804 lncRNA upstream 30504 61312887 ~ 61313283 (+) True G530464
TU600803 lncRNA upstream 31352 61312149 ~ 61312435 (+) True G530463
TU600521 lncRNA upstream 363682 60979857 ~ 60980105 (+) True G530194
TU601091 lncRNA downstream 13053 61357061 ~ 61357303 (+) True G530739
TU601092 lncRNA downstream 14057 61358065 ~ 61358610 (+) True G530740
TU601228 lncRNA downstream 93405 61437413 ~ 61437636 (+) True G530875
TU601274 lncRNA downstream 129155 61473163 ~ 61477886 (+) True G530920
TU601286 lncRNA downstream 135397 61479405 ~ 61479814 (+) True G530932
XM_021607089.2 mRNA upstream 480327 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA upstream 480327 60829575 ~ 60863460 (+) True LOC110526274
XM_036980624.1 mRNA upstream 591004 60671708 ~ 60752783 (+) False LOC110526270
XM_036980630.1 mRNA downstream 541825 61885833 ~ 61902001 (+) True LOC110526277
XM_021607098.2 mRNA downstream 571711 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 597507 61941515 ~ 61958209 (+) False LOC110526278
XM_021607100.2 mRNA downstream 617378 61961386 ~ 61964415 (+) True LOC110526279
XM_021607105.2 mRNA downstream 627479 61971487 ~ 61979525 (+) False LOC110526282
TU598912 other upstream 1571703 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 2564770 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2971819 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3070951 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 3230968 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 627728 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 805765 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 1476412 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 1668250 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1688923 63032931 ~ 63198734 (+) False G532237

Expression Profile