RNA id: TU616928


Basic Information

Item Value
RNA id TU616928
length 207
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G544832
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74616061 ~ 74616267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acataaacaggcgtgtgcctttccaaataatgttcaatcaattgaatttaccacaggtggacgccaatcaagttgtagaaacatctcaagaatgatcaatggaaacaggatgcacctgagctcaattgagtctcattgcaaagggtctgaatacatatgtaataaggtatgtttttttgttaatgagtgcaacattttcaaaaaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616927 lncRNA upstream 29 74615822 ~ 74616032 (+) True G544831
TU616926 lncRNA upstream 358 74615131 ~ 74615703 (+) True G544830
TU616925 lncRNA upstream 1141 74614534 ~ 74614920 (+) True G544829
TU616923 lncRNA upstream 3483 74612091 ~ 74612578 (+) True G544828
TU616907 lncRNA upstream 20997 74594794 ~ 74595064 (+) True G544817
TU616894 lncRNA downstream 210 74616477 ~ 74617643 (+) False G544805
TU616895 lncRNA downstream 276 74616543 ~ 74639188 (+) True G544805
TU616952 lncRNA downstream 55993 74672260 ~ 74675468 (+) True LOC110526577
TU616975 lncRNA downstream 87990 74704257 ~ 74724211 (+) True G544865
TU617261 lncRNA downstream 121798 74738065 ~ 74738310 (+) True G545117
XM_021607653.2 mRNA upstream 4026 74609391 ~ 74612035 (+) True LOC110526573
XM_036980963.1 mRNA upstream 8252 74601514 ~ 74607809 (+) True LOC110515568
XM_021607650.2 mRNA upstream 35070 74536945 ~ 74580991 (+) False LOC110526572
XM_021607651.2 mRNA upstream 35070 74537411 ~ 74580991 (+) True LOC110526572
XM_036980962.1 mRNA upstream 79625 74509447 ~ 74536436 (+) True LOC110526571
XM_021607658.2 mRNA downstream 14752 74631019 ~ 74656748 (+) False LOC110526575
XM_021607659.2 mRNA downstream 14752 74631019 ~ 74656748 (+) True LOC110526575
XM_021607660.2 mRNA downstream 40621 74656888 ~ 74663789 (+) True LOC110526576
XM_036980968.1 mRNA downstream 55917 74672184 ~ 74732529 (+) False LOC110526577
XM_036980969.1 mRNA downstream 55917 74672184 ~ 74732529 (+) False LOC110526577
TU616612 other upstream 327923 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1228374 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1470714 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1849210 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1949189 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 621533 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 805594 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1311961 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2271165 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2661725 77277992 ~ 77279354 (+) True G547884

Expression Profile