RNA id: XM_021609027.2


Basic Information

Item Value
RNA id XM_021609027.2
length 3562
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110527619
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29329584 ~ 29503787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGATGTGCGTCTTTCAGGCGACGCTGCCAGCGTGACGTATAATCGAATGGACGGTTCTTCAGAAACAGCTGGTCAACCACCTCCGTAGCCTGCTAGACGACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTACCTACTGTGTTTTACACACTCTTCTGTCGTATCTACTTGTTAACCTATTTAATTTAATATTACGTTATTTTGTATTAGTCAGCTATAGTAGctggctggttaagttagcacAATCCTAGTCGCtaatgatagctagctaacatccccgaccatgagcTCCCTAAACTACTCTCATCCTGTtgaagaagaggaggtctgctggacggagaaagaaactctggggctgaacattgtcgtgaaagaggagggtgatgttacagtaaaacaagaagtagagggtgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagggtgaaagaggaggagtatgttactgtgaaagaagaggaggaagaaaaagGGGAGGATGTAGCTTTTGGAGTGAAGACGGAAggggagattactgtcacattgaaagatgaagaggtggagataggagatctgattaacaccagagagagacgtgacTATCGTGGAGCCTCTGGGGtgcctcaacaacctcatgatgctgaagaggcagagaagagtctctccacatcagaacacctcaagaaaCATCTGCGGAGATCCACATGGAAGAGAACTCACTGCTgccctgactgtgggaagagcttcacctcatcaggcattaaaattcatcagagaatccacacaggagagaaacctttttgctgtgatcaatgtgggaagagttttactacatctggctctctgacagtgcaccagagaatacacacaggagagaaaccttatagctgtggtcaatgtgggaagaggttTACTCAATCAAACAGCCTGATAtcgcaccagagaatacacacaggagagaagccttatagctgtgatcaatgtggtaagagttttactacatctggcTCTCTTACtttacaccagagaatacacacaggagagaagtcttatagctgtaatcaatgtgggaaaaGTTTTATTCAATCTAGCTATCTGACAatgcaccagagaatacacacagtaGAGAAATCTTacagctgtggtcaatgtgggaagagtttttgtCAATCTAGAGATctgacagtgcaccagagaacgcacacaggagagaaaccttatagctgtggtcaatgtgggaagagttttattaCATCTAGCATTCTGACtcgacaccagagaacacacacaggagagaaaccgtataactgtggtcaatgtgggaagagttttattaCATCTAGCATtctgactcaacaccagagaacacacacaggagaaaaaccttatagctgtggtcaatgtgggaagagttttgttcgaTCTGGCCATCTGacaatacaccagagaacacacacaggagaaaaaccttatagctgtggtaaatgtgggaagagttttgttcgaTCTGACTATCTGAcattacaccagagaacacacacaggtgagaaaccttatagctgtgaccaatgtgggaagagttttacgacatctggctctctgactttacaccagagaatacaaacaggagagaaacctcataGCTGTGATCAGAGATAATTTGATAAACGATCTCTGATCAAATATCAGAAAATGTatacatgaaggagttgtttcatgatatcaattcattaatgtcacaatgtagaagccTAAACGTCACCCTGTTCTATGGATTTCAGCATGATTAATATTAGCCTCAGGGGGAAATCCAGGCTCTGAAATGGAAGAGTACTATTTATGTGATTTAACAAAAAGTGACTAACAAAAAAAgagttgtcctctaaccagggatgtTCACATTATTCCCAGAATCCGTGTGGTTTCtgagctgttagttttaacaggacgtgcaacctcatctccctcctctctcggcACAATTGATTTCGACGTGATATCGTTGAGTGATGACAAATAAGTGTTGTGTTCCTTTGTTTTGCAACCCCTAAATTTAAATGCATCactccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtaaaatatatctcccattttcatgtgttttttagttgtgttagtttcaacagcacgcacaacctgatttcccccctaatcgatatcagtgatttattgctaCTTGTCAAAAACAATAGCGTTTTTGGTGCTTGTGTCCGTGGTGAGGACCACTTGGTTCCTGATTGTCTCAAGGGTGGGCAGTCAAAAAGTTTTGTGTTTAGCCAATGCGTTGCCATGGATTACAATTTATTTTGACTGCACGTTTTTCCGTATTGGAGATGAGTTGTGTTTGGGCTCGTTCCAAagggacgagagttctagaagctagtgcgTTTTAGGAAGACGACATGTAGGGAGAACTGATTCAAataaaaaattattaaaaaaaaaatatatatattatttttttattgtttttaattgttgacagccagcagacaccatgtttatattgtagttgattataatgtgaaatggaagttgttttctgttggtggtaAGCATTCTCTTAAGGTGTTACAGTCTTtagtttttccatttatgttttgaggttggactttagcacgtatagctcgttagcacgtagggcgcactgattggtgtcacctcgtttgtcagtatgtgttacacctgtaatggcttgtccatctcgtggTGTttcaggttctatttaagagtgtctggccctgTGCTCCAGTTGTCTagatagatgtggagagtcaacaccttttagttgctccacctttttggtttgcttcctgtctttaagtttggtgtgggtttttcttttatttgcctcttcttgggcagatttagtgggtctcatggtgCATGTCTTttatgtcccagttgttgttactagtcaactttcagtggacactgaGAGCATAACTGCAACATTATGTTATACTTTTATTGgatcaaatggttgttttttgCAACCGAATAGATGGTTCTTTGAACAatctgtgtgttctactgaggatgggcctctgggagataactgacaggagatttacaatGTCTTTTGGGTGATGAAACCTAAAGAgaccgcattccagagcatgagttaatgttctATATGGTACCGGGgagagatgaccccagggccagaaCCTGGTCTCTACACAAAGAGTACTGTTTTTACATGAGatgctgtgaattataagtacctttcatacaaatcttaaccttgttaCCCGTTCTATACGTCTATTGTTggtcatgtaggttgaaaggggtgtatcttggctataaaagacctttgtacttttgtctcgTGGCTCTCAACAAATCATCTGGGGGTGATTTgtcgaccagccatcattatcgtaGAGCACTCAATTGAGTCACTTTATATGTGTACGCtgtattgacctgctcccttattattaagtgaataaagatttagtttaagaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU676485 lncRNA upstream 32044 29420905 ~ 29463664 (+) True G593444
TU676482 lncRNA upstream 77215 29416857 ~ 29418493 (+) True G593441
TU676407 lncRNA upstream 186755 29301795 ~ 29308953 (+) True G593370
TU676403 lncRNA upstream 197036 29297976 ~ 29298672 (+) True G593367
TU676402 lncRNA upstream 198281 29297128 ~ 29297427 (+) True G593366
TU676563 lncRNA downstream 24240 29528027 ~ 29528910 (+) False G593513
TU676590 lncRNA downstream 59563 29563350 ~ 29636763 (+) False LOC110527623
TU676591 lncRNA downstream 60392 29564179 ~ 29617073 (+) True LOC110527623
TU676656 lncRNA downstream 210926 29714713 ~ 29715027 (+) True G593597
TU676690 lncRNA downstream 277340 29781127 ~ 29822082 (+) True G593628
XR_005052566.1 mRNA upstream 53038 29413870 ~ 29442670 (+) True LOC118965282
XR_005052567.1 mRNA upstream 79257 29413870 ~ 29416451 (+) False LOC118965282
XR_005052568.1 mRNA upstream 99524 29389617 ~ 29396184 (+) True LOC118965283
XR_005052561.1 mRNA upstream 131346 29329591 ~ 29364362 (+) False LOC110527619
XM_036983125.1 mRNA upstream 131346 29359675 ~ 29364362 (+) False LOC110527619
XM_021609025.2 mRNA downstream 60022 29563809 ~ 29636769 (+) False LOC110527623
LOC110527616 mRNA downstream 182629 29686416 ~ 29703056 (+) True LOC110527616
XM_036983132.1 mRNA downstream 290910 29794697 ~ 29804454 (+) True LOC118965277
trnak-uuu-3 mRNA downstream 387092 29890879 ~ 29890951 (+) True trnak-uuu-3
XM_036984420.1 mRNA downstream 428038 29931825 ~ 29944679 (+) True LOC110528937
TU676195 other upstream 132357 29329672 ~ 29363351 (+) True LOC110527619
TU676297 other upstream 431116 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 603283 28892163 ~ 28892425 (+) True G593171
TU676138 other upstream 654625 28835209 ~ 28841083 (+) True G593144
TU675449 other upstream 1621287 27854006 ~ 27874421 (+) True plekha3
TU676564 other downstream 24240 29528027 ~ 29528910 (+) True G593513
TU676845 other downstream 528172 30031959 ~ 30032621 (+) True G593774
TU679426 other downstream 1399392 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 1577934 31081721 ~ 31082290 (+) True G596297
TU680885 other downstream 2505527 32009314 ~ 32009930 (+) True LOC110531742

Expression Profile