RNA id: XM_021609053.2


Basic Information

Item Value
RNA id XM_021609053.2
length 2232
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110527644
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30561586 ~ 30578870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAACACACCCATCTTGAGATTCGGGTTCTTATTGGCTGCCACTCCCGGTGGCTGTGAGAGCCTATGGGTTTCCTCTCATACGGGGCAGGAACATTCTCAGCCAATTGGAACCGCAAGGTGGAAGATTGGCATGGGACCTCATGAATATTACAAGAGGGCAAATGACGGCTACTTAAATTCAAGTTCACACCTATCGTTCCCTTCTTTTCTGTCCAAAGCCAGGCAGTAACAACCATACAGCGATCACGACTGAACGATCCAAAAGAAGACAATCATGTCCGAGAAACTGCCCTTCAAAGTTGCTGACATCAGCCTGGCGGAGTGGGGCCGCAAAGCTATTGATATTGCAGAGAATGAGATGCCCGGCCTGATGAAGATGAGGGAGCTGTATGGCCAGTCCAAGCCCCTGAAGGGCGCCCGCATTGCAGGCTGCCTCCACATGACCCTGCAGACCGCCGTGCTGATTGAGACCCTCACTGCCCTCGGAGCCGAGGTTCAATGGTCCAGCTGCAATATCTTCTCCACTCAGGACCACGCCGCTTCAGCCATTGCCAAAACTGGGGTTCCAGTGTATGCCTGGAAGGGCATGACCGATGAGGAGTATGTGTGGTGCATTGAGCAGACCATCTACTGGAAGGATGGCCAGCCCCTCAACATGATCCTGGACGATGGCGGTGACCTCACCAACATGGTCCACAAGAAGTACCCCAAGCTGCTGTCAGGAATCAAGGGGGTGTCTGAGGAGACCACCACCGGGGTGCACAACCTGTACAAGATGTTGAAGAGTGGCGACCTCAAGATCCCAGCCATCAACGTCAACGACTCAGTCACCAAGAGCAAGTTTGACAACCTGTACGGCTGCAGAGAGTCTCTGATTGATGGGATCAAACGGGCCACAGACGTGATGATCGCCGGGAAGGTGGCAGTTGTTGCCGGTTACGGTGATGTTGGCAAGGGGTGTGTTCAGGCCCTCCGTGGGTTTGGTGCCCGTGTCATCGTCACAGAGGTTGACCCCATCAATGCCCTGCAGGCTGCCATGGAAGGATACGAAGTCACCACCATGGAGGAGGCTTGCAAGGAGGGAAACATCTTTGTGACCACCACTGGCTGTGAGGACATTCTTTTGGGCAAACACTTTGAGCACATGAAAGACGACTCCATCGTTTGCAACATCGGCCACTTCGACTGTGAGATAGACATGAACTGGCTCAATGCCAACGCAGCCGAGAAGATAAACATCAAGCCACAGGTGGACCGTTACCGCATGAAGAATGGCCGCCACATCATTGTGCTGGCTGAGGGCAGATTGGTTAATCTGGGCTGTGCCATGGGTCACCCCAGCTTTGTCATGAGCAACTCCTTCACCAACCAGGTGTTGGCCCAGATTGAGCTGTGGAAGAACACCAGCAAGTACCCCCTGGGAGTTTACTTCCTGCCCAAGAAGCTGGATGAGGAGGTGGCTGCTGCCCATCTTGACAAGCTCGGCGTCAAGCTGACCAAGCTTTCAGATAAGCAGGCCAAATACCTGGGACTGCCCCGCGAAGGACCCTTCAAGCCTGACCATTACCGCTATTGAGAAATGTCAGGAAGGTGGCCAAGCAGCGGCCCAGACTCATGGTGGGGGTCTGATGGTGGTATGGTGGCGCATGGACTCGTGGGTTTGGGTAGGCCAAGATTCCCACAAGTCTTTTGGAGGTTAGGACATTTTGCTTCAACTACCCTTTAAACTGTCTTGCCCATTCTACATACCTTTTAGATTCCAACCAGAGCTCCTTCGCCTTTACAGCAACAAGTGCTAAGTGGCTTCTAAAGGCACTATTCTTGTTATAAATTGCATTCCCTCTTTGATCATGGAAAAAACGTGATGCTTTTAGTTAAATCCCCATACTATTCAAGTTTACATATACACCATAGCTAATATGGCAATAAGTGCTGGTTTCATATCATTGTCTTATGGAGAAACTCTGACGTACCACCAAAGCCTGGCTTAAAGAACACACTCAGTTTCCCCATTTGCTTATTTTGTAAGTCTAGGATTCTGTCTGAAGGGACAGGAAACATCCAAGTGCTTTCCTGTTCTGTTTTCTTAGCTGAGCTGTGACGGAATGGGCTGTGGTCTGGTCGAACATATACTGCCATGTTTAACGGTTACATTGTTAATCCCAAGTGTTGCATTTCCTACAGTACTTGCACTGTTGTGAAATGTGATGCAATAAAGATACAATTTTA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0033353 S-adenosylmethionine cycle biological_process
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG:

id description
K01251 E3.3.1.1, ahcY; adenosylhomocysteinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU678826 lncRNA upstream 4066 30557287 ~ 30557520 (+) True G595603
TU678822 lncRNA upstream 9773 30551607 ~ 30551813 (+) True G595599
TU678816 lncRNA upstream 15142 30546007 ~ 30546444 (+) True G595593
TU678811 lncRNA upstream 21910 30539469 ~ 30539676 (+) True G595588
TU678809 lncRNA upstream 29256 30530480 ~ 30532330 (+) True G595586
TU678835 lncRNA downstream 4132 30583002 ~ 30583380 (+) True G595612
TU679009 lncRNA downstream 264682 30843552 ~ 30844716 (+) True G595775
TU678947 lncRNA downstream 265980 30844850 ~ 30858694 (+) True G595715
TU679383 lncRNA downstream 297050 30875920 ~ 30876207 (+) True G596127
TU679388 lncRNA downstream 299420 30878290 ~ 30878683 (+) True G596131
XM_021609051.2 mRNA upstream 25459 30509261 ~ 30536127 (+) False LOC110527643
XM_021609052.2 mRNA upstream 25459 30509767 ~ 30536127 (+) True LOC110527643
XM_021609050.2 mRNA upstream 62027 30461359 ~ 30499559 (+) True LOC110527642
XM_021609044.2 mRNA upstream 358260 30178397 ~ 30203326 (+) True LOC110527639
XM_021609045.2 mRNA upstream 377047 30178397 ~ 30184539 (+) False LOC110527639
NM_001160702.1 mRNA downstream 44614 30623484 ~ 30636008 (+) True if2b
XM_036983140.1 mRNA downstream 154713 30733583 ~ 30854816 (+) False LOC110527647
XM_021609056.2 mRNA downstream 154714 30733584 ~ 30854816 (+) False LOC110527647
XM_021609059.2 mRNA downstream 154715 30733585 ~ 30854816 (+) False LOC110527647
XM_021609060.2 mRNA downstream 154715 30733585 ~ 30854816 (+) True LOC110527647
TU676845 other upstream 528965 30031959 ~ 30032621 (+) True G593774
TU676564 other upstream 1032676 29528027 ~ 29528910 (+) True G593513
TU676195 other upstream 1198235 29329672 ~ 29363351 (+) True LOC110527619
TU676297 other upstream 1496994 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 1669161 28892163 ~ 28892425 (+) True G593171
TU679426 other downstream 324309 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 502851 31081721 ~ 31082290 (+) True G596297
TU680885 other downstream 1430444 32009314 ~ 32009930 (+) True LOC110531742
TU682386 other downstream 2656943 33235813 ~ 33236636 (+) True G599004
TU682518 other downstream 2711656 33290526 ~ 33295528 (+) True G599123

Expression Profile