RNA id: TU673811



Basic Information


Item Value
RNA id TU673811
length 702
RNA type TUCP
GC content 0.53
exon number 2
gene id G590936
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26552554 ~ 26553542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCGATATTCCTTCATAATTTGCTCGATAACGTTATGGAAAAGGGTTCATTGGATAAATGTGGCAACTTCTCTTGCTGCGATAAACTATTGGGCGGTGCTAGTTTTCAGGCCTCGTCAGTGGGTTGAGGGGTCATTGGGGCTAGAAATGTTTGCTTGACCTAGCAACCCATCAGTATATAGCTAATTCTGCTACTGAGATCTGATGAGAGCATGCACGCGCATCAGTTGAACATGTTTACTTGTAATAAAAACACTAATGTTATACACATCTGTTGACACATGGCAGTGTTTTCAATTTCAGAAAGtgacacacaccatacacaacaCTAACCTGTGCCTGAGATGAGGACGCCCACCCTGGTCCTCTTGCGGGGGACGGTGCTACTGCTGTCCCCTTGAGATGCTCCGTTCTGCATGGGCCCCAGGTCTACTACACAGGGAGAGGGGCCTAAACGCAGGCTGTGCTTCAGGTTCCTGATCACCACCGGCTCGGCCCCAGGCTGCTTGTGGGCCAGCGAGCCCACGATCCACGCATCCTCGTGGGCTTGGAGCTTCCTCAGAACACTCTGGGCATCCGGAAAGGCCACCACCAGCACGGCCCCAAGGCCACAGTTGAAGGTGCGCCCCATCTCCTCCTCGCACAAGCCCCCCTCCTCCTGGAGCCATGAGAACACAGGAGGGATGATCCAACGGGAGGCGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU673801 lncRNA upstream 8873 26542471 ~ 26543681 (+) True n6amt1
TU673799 lncRNA upstream 21332 26530796 ~ 26531222 (+) True G590924
TU673791 lncRNA upstream 30981 26521374 ~ 26521573 (+) True G590916
TU673789 lncRNA upstream 41206 26511001 ~ 26511348 (+) True G590914
TU673781 lncRNA upstream 48643 26503703 ~ 26503911 (+) True G590906
TU673828 lncRNA downstream 21571 26575113 ~ 26576350 (+) False G590948
TU673830 lncRNA downstream 21571 26575113 ~ 26576880 (+) False G590948
TU673824 lncRNA downstream 21894 26575436 ~ 26576350 (+) False G590948
TU673825 lncRNA downstream 21894 26575436 ~ 26576880 (+) False G590948
TU673827 lncRNA downstream 21894 26575436 ~ 26577377 (+) False G590948
XM_021608970.2 mRNA upstream 8870 26535783 ~ 26543684 (+) False n6amt1
XM_021608971.2 mRNA upstream 8870 26535783 ~ 26543684 (+) False n6amt1
XR_002474143.2 mRNA upstream 8870 26535783 ~ 26543684 (+) False n6amt1
XM_036983094.1 mRNA upstream 8870 26536072 ~ 26543684 (+) False n6amt1
XM_021608961.2 mRNA upstream 580156 25956422 ~ 25972398 (+) True jam2a
XR_005052558.1 mRNA downstream 31977 26585519 ~ 26595151 (+) True LOC118965273
XM_021608977.2 mRNA downstream 905152 27458694 ~ 27482580 (+) True LOC110527592
XM_021608978.2 mRNA downstream 952367 27505909 ~ 27554755 (+) False LOC110527593
XM_021608988.2 mRNA downstream 1300756 27854298 ~ 27874521 (+) False plekha3
XM_036983103.1 mRNA downstream 1591994 28145536 ~ 28165219 (+) False LOC100653476
TU672748 other upstream 527245 26003930 ~ 26025309 (+) True G589933
TU672520 other upstream 943948 25603605 ~ 25608606 (+) True G589734
TU671438 other upstream 1646973 24904331 ~ 24905581 (+) True G588755
TU670255 other upstream 2744554 23807722 ~ 23808000 (+) True G587660
TU670007 other upstream 2931185 23611352 ~ 23621369 (+) False LOC110527540
TU673831 other downstream 23865 26577407 ~ 26577933 (+) True G590949
TU675056 other downstream 929508 27483050 ~ 27483796 (+) True G592134
TU675374 other downstream 1150041 27703583 ~ 27707294 (+) True G592445
TU675449 other downstream 1300464 27854006 ~ 27874421 (+) True plekha3
TU676138 other downstream 2281667 28835209 ~ 28841083 (+) True G593144

Expression Profile