RNA id: TU675374


Basic Information

Item Value
RNA id TU675374
length 3306
RNA type TUCP
GC content 0.51
exon number 2
gene id G592445
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27703583 ~ 27707294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccaacctcagcctcgggaccccaagggtaAGACGTTttagtttttgccctagcactacacagctgattcaaataatcaactaatcatcaagctgtgtagtgttaaggcaaaaaccaaaacgttcaCCCTTTGGTGTCTCGCTGCCAGTTTGGGAAATGATGGGATTGACAGTCTCAAATATCTCAACACAATAGTCTGCATTGGTAAGGACATTAAAATAGCTTACTTACCTCAATTAAAGTAGATACACCATTACATATAGGCCTACACTATATCCATATTGAAATGTGTAGAAAAACACTGGATAACGTTACCTTCTGATTCAGAAAATCctttaaaacaaacatttatttacactctaaaatggattaaaacaaaaTATTACAATCCCAGAGATATGTCAATCATAACGTGCTTATTGTCCAGTGCTTGCATTACACTAGGTAGTCATTGTCATTCCGCAAAAACCCTGCGCTGATAGATTCTGTTACCCATGACTCTCTAACAATCTTAAACTTTTTGGTAAAGAGTCGTCTGAGGGTTCTTAAAGCCAACACTCTTGTTTCCTCCACCACTATGACATGAGAGACCCCTTCCTCAAGCTTCTGCACTACTGTCCCTCCGTGGAAGCGGAATTCCAGAGCCCGCGTGTCCAGACAAGTTGCCGGTACGATGCTTTTAGGGTCTCCTATGTCTGCGTATCTGTCCATGTAGACCCTGAAAGGTCTGAACATGCTAGTGGGGAGGTCATCCCAGCTGAAGCGTTCCTCCAACTTAGCGATGCACTGTGCCGTCAAAGTGTCCACTCTACCAATCCGACCAAAGACTTCCCTCAGCTGCTGCTCGTCCGTGTCCACAAAGTAGCTGTCTCCGTAGCAGTCGTATTCCTTGGCAAAGTGCTCCTTGGTGGAGGGTGAAATGTGTATCATGTGACGCGGTTGCCATGGCACCACCTGCTTCCTGTCTAGGCACTCCAGCAGCCAGGCAGCCCACACTACGTCGTGCTGGTCTGAAGAGATCAGGTTCTTCACGCGCATGTTCTCCACAGCGGCGATCACACAGTAGGTGTCCGGTCCCGGGTTCTGGACTACAATACCGCCACATCGGGCCACTGCTTTCTCCAGCTCCGCCTTGGGGTGCGCCTCATTGCCATTCATAACGCAGAACTCCACGTCCTCGAACATGTCCGTCTCCTTGGTAACGCCAGATAGGTCCTGGGACTTGAAGTGGTCGATGACGCCGACAGCTTTCTTGGGCTTGGCCGCTGCCGGCAACTTGCGCTTCTTCTTTTCAGGCTCGTCATTGATGCGGAGGTGGCGCGAGAACAACTTCCCGGACGCCTTGTTGCGAAACTGATCGAGCTCAGCTAGGGTCATGCACTGGTGCCACTCTTTGTCCTCCCGGATCTTCTCGATCCTGGGGAAGCGTAGCGTGCAGTTGGTTTTGTACATCTCACTACTGACTATTTCTGCTGCCTTCACCTGGATGATGACCGAGTTGCACGGGTCAATGTAGACTTCTGGTCTCTCCGTCCCACACAGAATAGAGGCCGGAGGGTCGTTCTTCCGGTAGACTTTCCAGTGCTTGGCCAGCTTCAACCCCAAGTCATACAGCTCCTTCATGGTGTAGCCGGAACCGATGCGACAGAGCGTGTGGAAAacggagggtttctctccaggctTCGGAGCTTCGGCCACCGCGACGAGGAAATGAGACATCATGCCACCTCGCCTTCCTTTTCCCCAGTAGCCTCCGACAATCAACAGGTCGAGCTCATCCATCAAGCCATCAACGTACTCCGGCTTTATCTTGAGCCAGCCCTCACCTCGCTTATCGGGCTTGTAGACGGATGAGGGATCTTTCACCATGATGCCCTCTTCCCTGTTGTCAATGGCTTCGTTGAGGGCGTTTACCACCTCTTGCATAGTTTTGGCCTCCGTTTTCGGCACCACGTGTATCCTCCCTTTAACAGGAGTGAGGACAGTCTGAAGGTTGTCGTGGCGCACCTTCAACGTCTCGTTGCCAAACTTGTGGTCGTTCACAAGAAGTACATCGAAAACGCAAAAGCACGTCTGCAGCTCGGAGTCATCCACTAGCCTCTTGATGTCAAACTTGCTTCCTTTTTGCATGAAGGTGTCGGTAGTGGGGTTGTACGCCATCATCTCCCCATCCAGGATGCATTTGACTACATGGGGCTTGAAGACATTGTGGATGAAAGGCGTCAGGGAGCCCTCTAGCGGCGATGCACCAAACTGCTGGGTGTACTCGAAGGAGTTCCGTGTGAAGTACTTGTAGACGTCGCCATCCTTGTGCAGCTGGATGCGCTCTCCATCCAGCTTGGTCTCTATGAAGAAGGTGCTGTTGCCCATCTGCTTCTCCACCTGGCGCATGTTGGCCACGGCGGCCAGCATAGGTTTGAAGGCAAAGAACAGGCCAATGGACACTTCGCTGAGGGACACAAAGGGGTCGTGGAGCTGCCGGCACACCTTGTTTAGGTCTGTGGTGACGTTATAGAGCTCGGCCGCATCTAAGTGGAACACCTGGAGCACGGTCTCTTTGCTGACCCCCAGCTTCATGTCCTTCAAGATCATGCGGATAAGCCACTTCTGCTCCAGTGCCGTGCTCTGGGTGATAAGGTGCAGCAGGCTCTTCTTCACCAGGTCCTTCTGCTTACCAGCATTGTTGATGGCCACAGAGTCCAGAAAGTCGTTGACTTCTCTGATGGTGAGGTTTCCCTGGCTTGTGCAGCGTTTCTTCAACACAAAGTAGGTCATAAGAGCGAAATCTCCTGCCTCCCCCTGAGATGTGGTGGGGGTGCGGTAATTCAACAGTTTGTTGGCTTCCGGTCCATTCTTGGGGAGACCCAAGACGTCTATGTAGAGCTTGGCTAACATACTCTCTTTAATGCCATAGGCCACACGCTCCCTTTCGAACGAGGGGACTATGAGACGCATGGCCGGGTAGAAAGAGTCTGTGGTGGTAGGGTTGTCTTTGTGGAGGGCCGCATGGAATTTCCTCCAGGAGTCTATGAAGTCACGGAGAAACTTTGATTTGTCTGGTCGGAGTTTGGTCTTCTGTATTTTTTCAAGCGTAGTGCACAGGTGAAGAAATGGAACTTGAGCAGCGACAGAGCTCTGGGGAGCAGCAGATTCGCTTTTTGAGGTTCCCTCCATTGTAAAagctaaaaaaaaccTCAAAGCAACCAGCCAACTCGTCAGTGTCTTGCAACTCTTTGGGGATCCCTCCTCTACAACATGCTGTGACATGCCCGGGTTATGACTGCATCCATCATACGTGTCCTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675372 lncRNA upstream 776 27702486 ~ 27702807 (+) True G592444
TU675366 lncRNA upstream 4162 27699077 ~ 27699421 (+) True G592438
TU675360 lncRNA upstream 5639 27697646 ~ 27697944 (+) True G592432
TU675201 lncRNA upstream 11894 27691604 ~ 27691689 (+) True G592278
TU675187 lncRNA upstream 35813 27667554 ~ 27667770 (+) True G592264
TU675378 lncRNA downstream 5359 27712653 ~ 27712787 (+) True G592447
TU675403 lncRNA downstream 18610 27725904 ~ 27726181 (+) True G592472
TU675412 lncRNA downstream 27152 27734446 ~ 27734785 (+) True G592481
TU675421 lncRNA downstream 33723 27741017 ~ 27744833 (+) True G592485
TU675515 lncRNA downstream 143455 27850749 ~ 27892133 (+) True G592568
XM_021608978.2 mRNA upstream 148828 27505909 ~ 27554755 (+) False LOC110527593
XM_021608977.2 mRNA upstream 221003 27458694 ~ 27482580 (+) True LOC110527592
XR_005052558.1 mRNA upstream 1108432 26585519 ~ 26595151 (+) True LOC118965273
XM_021608971.2 mRNA upstream 1159899 26535783 ~ 26543684 (+) False n6amt1
XM_021608988.2 mRNA downstream 147004 27854298 ~ 27874521 (+) False plekha3
XM_036983103.1 mRNA downstream 438242 28145536 ~ 28165219 (+) False LOC100653476
XM_021608991.2 mRNA downstream 438246 28145540 ~ 28168201 (+) True LOC100653476
XM_036983104.1 mRNA downstream 514331 28221625 ~ 28258442 (+) True LOC118965275
XM_021608995.2 mRNA downstream 598973 28306267 ~ 28368030 (+) False LOC110527602
TU675056 other upstream 219787 27483050 ~ 27483796 (+) True G592134
TU673831 other upstream 1125650 26577407 ~ 26577933 (+) True G590949
TU673811 other upstream 1150041 26552554 ~ 26553542 (+) True G590936
TU672748 other upstream 1678274 26003930 ~ 26025309 (+) True G589933
TU672520 other upstream 2094977 25603605 ~ 25608606 (+) True G589734
TU675449 other downstream 146712 27854006 ~ 27874421 (+) True plekha3
TU676138 other downstream 1127915 28835209 ~ 28841083 (+) True G593144
TU676166 other downstream 1184869 28892163 ~ 28892425 (+) True G593171
TU676297 other downstream 1352404 29059698 ~ 29064592 (+) True G593283
TU676195 other downstream 1622378 29329672 ~ 29363351 (+) True LOC110527619

Expression Profile