RNA id: TU694572


Basic Information

Item Value
RNA id TU694572
length 301
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G610084
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42890127 ~ 42890427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactaggtccctccgtgtggttctgggattttttgcacaccgttcttgtgatcattttgaccccacggggtgagatcttgcccagcaacagccccagatcgagggagattatcagtggtcttgtgtgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694535 lncRNA downstream 37346 42852442 ~ 42852781 (-) True G610058
TU694525 lncRNA downstream 48840 42841058 ~ 42841287 (-) True G610049
TU694522 lncRNA downstream 55857 42833577 ~ 42834270 (-) True G610046
TU694516 lncRNA downstream 61198 42828689 ~ 42828929 (-) True G610040
TU694500 lncRNA downstream 86359 42803477 ~ 42803768 (-) True G610025
TU694578 lncRNA upstream 18862 42909289 ~ 42909517 (-) True G610090
TU694581 lncRNA upstream 22667 42913094 ~ 42913334 (-) True G610093
TU694584 lncRNA upstream 25862 42916289 ~ 42916538 (-) True G610096
TU694587 lncRNA upstream 28786 42919213 ~ 42919535 (-) True G610099
TU694589 lncRNA upstream 45104 42935531 ~ 42935770 (-) True G610101
XM_021609312.2 mRNA downstream 635 42888618 ~ 42889492 (-) True LOC110527797
XM_021609311.2 mRNA downstream 2901 42884956 ~ 42887226 (-) True cplane2
XM_021609308.2 mRNA downstream 44319 42842713 ~ 42845808 (-) True si:ch73-361p23.3
XM_036984482.1 mRNA downstream 75090 42805342 ~ 42815037 (-) True LOC110527110
XM_021608268.2 mRNA downstream 82039 42805342 ~ 42808088 (-) False LOC110527110
XM_021609313.2 mRNA upstream 883 42891310 ~ 42906626 (-) False LOC110527798
XM_021609314.2 mRNA upstream 883 42891310 ~ 42906626 (-) False LOC110527798
XM_036983272.1 mRNA upstream 883 42891310 ~ 42911129 (-) True LOC110527798
XM_036983273.1 mRNA upstream 38822 42929249 ~ 42933032 (-) True LOC110527801
XM_036983274.1 mRNA upstream 54770 42945197 ~ 42952276 (-) False LOC110527802
TU694523 other downstream 54058 42835747 ~ 42836069 (-) True G610047
TU693245 other downstream 864423 41968569 ~ 42025704 (-) True G608900
TU693231 other downstream 938883 41944571 ~ 41951244 (-) True G608888
TU692189 other downstream 1541228 41156670 ~ 41348899 (-) True LOC110527764
TU694690 other upstream 216700 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 218181 43108608 ~ 43112038 (-) False G610182
TU694702 other upstream 222721 43113148 ~ 43116144 (-) True G610190
TU694694 other upstream 237384 43127811 ~ 43149026 (-) False G610183
TU694691 other upstream 257073 43147500 ~ 43167320 (-) True G610183

Expression Profile