RNA id: TU696365


Basic Information

Item Value
RNA id TU696365
length 389
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G611650
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44457911 ~ 44458299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgggtgtatACTCACGTGTTGTGGTGGTGAATGTATATGCGGTGAGCTGCGGCCTGTTGCAGGCAGAACAGATGGACTGAGACTCTCTGTAGTATCTCTGTGGTGGCAAAAAATAACTGGCCAAATGCCCAACACTTCTCCTGGTCTGCCTCCAGTATCCCAGCTAACACTGGCACCAGTTGACCACTCAGACCCCTACACAGAAGAAGTGGAAGAGTGAGAGGTACTGACTGAGAGCTGGCTGCTCTGTGGCAGGCGGTAACTCCACTCTATAGGGCCGTCGTCAACCCTCTGGGCTCCAGCAATGGCCCCAACCGGCTTCTCTGTGGTGACCTTATACCTACACGGCACCGACAGGGTGCGTGGGAGCAGAGGAGAAGGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696364 lncRNA downstream 456 44457255 ~ 44457455 (-) True G611649
TU696297 lncRNA downstream 23769 44433919 ~ 44434142 (-) True G611585
TU696323 lncRNA downstream 32416 44424647 ~ 44425495 (-) True G611611
TU696343 lncRNA downstream 51123 44403168 ~ 44406788 (-) True G611629
TU696290 lncRNA downstream 84088 44345377 ~ 44373823 (-) True G611580
TU696366 lncRNA upstream 521 44458820 ~ 44459048 (-) True G611651
TU696369 lncRNA upstream 5598 44463897 ~ 44464187 (-) True G611654
TU696373 lncRNA upstream 6154 44464453 ~ 44464685 (-) True G611657
TU696375 lncRNA upstream 9292 44467591 ~ 44468547 (-) True G611659
TU696378 lncRNA upstream 14484 44472783 ~ 44473036 (-) True G611662
XM_021609398.2 mRNA downstream 137441 44315503 ~ 44320470 (-) True LOC110527846
XM_021609397.2 mRNA downstream 163815 44291263 ~ 44294096 (-) True si:ch211-222l21.1
XM_021609388.2 mRNA downstream 188606 44261628 ~ 44269305 (-) True prxl2b
XM_036983312.1 mRNA downstream 273707 44178431 ~ 44184204 (-) False LOC110527840
XM_021609386.2 mRNA downstream 273717 44178431 ~ 44184194 (-) False LOC110527840
XM_021609418.2 mRNA upstream 128011 44586310 ~ 44590398 (-) False ghrh
XM_021609419.2 mRNA upstream 128011 44586310 ~ 44590398 (-) True ghrh
NM_001124585.1 mRNA upstream 137460 44595759 ~ 44602923 (-) True lbp/bpi-1
LOC110527856 mRNA upstream 147762 44606061 ~ 44607332 (-) False LOC110527856
LOC118965287 mRNA upstream 150498 44608797 ~ 44610332 (-) True LOC118965287
TU695139 other downstream 877947 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 920946 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 26556 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 26556 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 1416666 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 2810024 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4028748 48487047 ~ 48529168 (-) True G616880

Expression Profile