RNA id: TU696373


Basic Information

Item Value
RNA id TU696373
length 233
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G611657
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44464453 ~ 44464685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaggacctcagactgggggcgaaggttcaccttccaacaggacaacgaccctaagcacacagccaagacaacgcaggagtggcttcgggtctctgactgtccttaattggcccagccagagcccagaattaaaccaatcaaacatctctggagagacctgaaaatagctgtgcagcaacactcccatccaacctggcagagcttgagaggatctgcagagaagaatggtaga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696369 lncRNA downstream 266 44463897 ~ 44464187 (-) True G611654
TU696366 lncRNA downstream 5405 44458820 ~ 44459048 (-) True G611651
TU696365 lncRNA downstream 6154 44457911 ~ 44458299 (-) True G611650
TU696364 lncRNA downstream 6998 44457255 ~ 44457455 (-) True G611649
TU696297 lncRNA downstream 30311 44433919 ~ 44434142 (-) True G611585
TU696375 lncRNA upstream 2906 44467591 ~ 44468547 (-) True G611659
TU696378 lncRNA upstream 8098 44472783 ~ 44473036 (-) True G611662
TU696384 lncRNA upstream 14360 44479045 ~ 44479246 (-) True G611668
TU696387 lncRNA upstream 17893 44482578 ~ 44482805 (-) True G611671
TU696393 lncRNA upstream 20792 44485477 ~ 44485752 (-) True G611674
XM_021609398.2 mRNA downstream 143983 44315503 ~ 44320470 (-) True LOC110527846
XM_021609397.2 mRNA downstream 170357 44291263 ~ 44294096 (-) True si:ch211-222l21.1
XM_021609388.2 mRNA downstream 195148 44261628 ~ 44269305 (-) True prxl2b
XM_036983312.1 mRNA downstream 280249 44178431 ~ 44184204 (-) False LOC110527840
XM_021609386.2 mRNA downstream 280259 44178431 ~ 44184194 (-) False LOC110527840
XM_021609418.2 mRNA upstream 121625 44586310 ~ 44590398 (-) False ghrh
XM_021609419.2 mRNA upstream 121625 44586310 ~ 44590398 (-) True ghrh
NM_001124585.1 mRNA upstream 131074 44595759 ~ 44602923 (-) True lbp/bpi-1
LOC110527856 mRNA upstream 141376 44606061 ~ 44607332 (-) False LOC110527856
LOC118965287 mRNA upstream 144112 44608797 ~ 44610332 (-) True LOC118965287
TU695139 other downstream 884489 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 927488 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 20170 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 20170 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 1410280 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 2803638 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4022362 48487047 ~ 48529168 (-) True G616880

Expression Profile