RNA id: TCONS_00035430


Basic Information

Item Value
RNA id TCONS_00035430
length 6739
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_017971
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14683699 ~ 14781904 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCCAACTCATCTAGACCCCAAAGAGTAGGCGGGGTCAACGTAAAACTCGATTTCTATTGGTCGAGGGCGAGGCAGCAGGAGCTGTGAGCGCTGGATCAACAGCAGCACGGAGCAAACGCAGACGGGAAGCAGTCAGGCGGGCAGCGCTTCTCAACGGGGGGTTTAAACGTAGAAAACTGACCCAAGTGTCTGCTCTGTACCGTGAAACACACCCCCTTTACCTTGATACAGTTGCGAACAATTAGCATTATTAGCTAGTCTTTGTCTCTGTCGTCAGTATAGGGTGAGAATAGATAAAAAAGCGAGGATGTTGGTCCCCGCGGGAAGATAATGAAGAAGCTGCGCGTGTTGTTCCTGTGCTCCGTTTTAGCTCTCCTGTGCTGGCACTCTTGTCATGATGTTTATTGTTCAGAAGAGGTCTCCTCTGGCCCAGGACTCCCTGCACAGGATGACGGCAGTTACACAATGCAGGAACCAGGGGCTGGCGAAAAGGTCGAAGAGGAAAGGgcgacacacacacagtcatcgTACGACGTGGGCCTGGAAACAGAGAGAGCTGCACTAAAGGAAACATCATTGCACTCACAAGAAACCCCGCATGAAGAGAAGCACAAACAGACTGTGAATTTGGAAGAGGTGCTGGAGGAGCCACAGATTCAGCATGACTCTGCTCTCCCAGAgctagaacaacaacaacaacaagagcaGCACCCGGAAGGCCAGAGCTCACAACATCCAGACCAACAAGATTCAGCTCAACCACCAACATTTGCACAGCCTGAAACAGCACCGCCACTTTCCCAACCTGACCCAGAAGTTCCACAGGCCACTGCCACAGAGGACCAGGCCGCACAGCCCTCCACTGATGAAACCCCGCCACATCCTGACCCACACGCTGAAGAAGATGCCTCTGCACCTGCAGATGAACTCCAGAACAGCCCAGAGTCCACCTCACCTACCTCAGTCACCTCCTCTGAGAGCCTCTCCagTGTTGTGGAGGAACAAGTGGAGACCCAAGCAGAGAACCAGTCCACCGTGTTGGAACAGAGTACGGAGACCAGTACTGATCCGGCTGACTCCCTGGACCCAAGTGAGCTGGACCTCACAGAGACAGGGCAGACAGACCGTATTCCTCCACCTACGGAAAGCCAGCAGGTGGCGGATCATGAAGGAGCGACAGACCCTCCTGTACCCAGTAAAGAAGACATCCCTACCTTCGATGAGTGGAAGAAGAAAGTGATGGAAGTGGAGGAGAAGAAAAGTCAGTCTCTGCACACTTCATCAAATGGCAGCCCTCATCCAGTCAAAAAGGTCCAAAAGAATTTCAAGAATAACTACGCTTCCGTCGAATGCGGGGCCAAAATTCTTTCGGCCAACAACGAGGCTAAGAGCACATCTGCCATCCTGATGGAGAACATGGATCTGTACATGCTGAACCCCTGCAGTACCAAGATCTGGTTTGTTATCGAGCTCTGTGAGCCAATCCAGGTGAAGCAGCTGGACATTGCAAACTTTGAGCTGTTCTCATCCACACCAAGAGACTTCCTCGTGTCCATAAGCGACAGgTATCCGACTAATAAGTGGATCAAGCTGGGCACGTTTCACGCCCGTGATGAACGCACAGTACAGAGCTTTCCCCTAGACGAGCAACTCTATGCCAAATATGTGAAGgttgAGCTGCTGTCTCATTTTGGCTCTGAACACTTCTGTCCTCTCAGTCTGATCAGGGTGTTTGGCACCAGTATGGTGGAGGAGTATGATGAGATTGCAGACTCTCAGTACACGTCAGAGAGAGCTGAATATCTGGATGAAGATTATGATTACCCACCCGGCTACCTGCCGTCAGAGGACAAGGCATCAAAGAATCTGCTGGGCTCTGCCACAAATGCCATCCTGAACATGGTAAACAACATCGCAGCAAATGTGCTCGGAGGCAAACCGGAGCTGGAAGACGGAGCTGAACTGGAAGGAAATGTTTCCTCTGGGACCGAAAACGTCACACAGGCATCAACAGAAACCACACTTACGCCAGATCCGACCCCCACTGAACAGCCCCATACGCTGGATGTTCTGGAGTTGGATCCCACGTTTGTGAAGGAGGACATGGAGGCTCCTATACCCGAGGCTCCTTCACAAGCTCCTACAGTAGCTCCTGCTGAGGAGAGCCGTATTGTCATTCTCATCGAGGAGGATGAAGAGTCCACTCAGCCGACGGTGACCCTGCTGGAGGAGGAGGGTGAGGAGGAGAGGAGGCTGGAGGAGCTGTGGGAGAGcgagagcactacctactgcggccACCTCTCCACGCTCTCCTGCCTGGCGTCTTTACATGAACACTTCTACTGCTACTGCTCAGCGGCGTTAGCACTGCAGCGCCAGCGTAAAGACCGCCGCCACAAAGCCCAGCACACACAAGCCCACACTAAAACTCAAACCACCTCTCAGCAGACCCTCACCGACCCTACGCCTTCCCAAGAACCTCCTGCACCCTCAGAGAAACTATCAGAAGCAGAGCGGCCCTCGCAGACGCAGTCTGAGAGGATTTCTCCTACTGAAACGGCAGCTGCTCCATCTGAATCCTCCAACTGGGAATCTTCATCCACAGAGCTGGAACTTCCACCTGAGACCATCCTTTTGGAGCCCAGCCGCACCTCCACCCTCCCTCCACACAGCTTCTCTGAAACCCCCACCCAAAACATCCCGGAGTCCCTTCCTACAGGAGAGCCTGTTGACCAGCGTCCGCAGTACCTGGTGGACATCCCTGAAACCCACGCCCCTGGGAGTGTTTGCAGCAGCACCAGCAGTGTTCCGTCTCCCTCCGCTGTCTCCTCTACACCCCTCTCCAGCACCACTGAACCCCACAGCCTAGAGACGGACCCTCCCAAACTGGAGCTCCCAGTTCCCACCAAAGAGCAGACAGCTCAGCCGTTGCCCACTCACACCAGGCCTGCTGAAATCCCTCCTCCTACCGAAATTCCCATCCTGATTCCAGAGGCCTCCGAAAATGGCAAGGTCTCATTAGTTGAGGACCAACACCACAATGCTGTGGTGTCCCAACCAGAGCTTTCTGAAGCCCCACATGAGGACACAGTTGATGATATTCTGCTCCCGCACCGCACTGCCGGAGAGTTTTATGCAGAGCAGCAGCAGACAGCCGAAATGGGCCACAGTAATGGAAACGGCAATGGTAATCAGGTGCACGGGTCCAACCAGAAAGAATCAGTGTTCATGAGACTGAATAACAGAATCAAAGCACTGGAGATGAACATGTCTCTCAGCAGCAGATACCTGGAAGAGCTTAGTCAGAGGTATCGTAAACAGATGGAGGAGATGCAGCGGGCTTTCAACAAAACCATCATCAAGCTGCAGAACACCTCCAGAATCGCAGAAGAGCAGGACCAGAAACAAACTGAGTCTATACAGATGTTGCAGAGTCAGCTGGAGAACGCCACCAGGATCATGCTGAATCTGTCTGCCACAGTTGCCCAGCTGCAGCGAGAGGTGTCTGATCGGCAGATTTACCTGGTTCTGTCTCTGATCCTGTGTCTGATGCTGGGTTTGCTGCTTTGTACACAGTGCTGCAGGAGCTCCACCAATCACAACACCAGCCCGACCATTCCCATGAGCAACAACTACCCCAGTCCCAAGagGTGTTTTTCCTCATATGATGATATGAGTCTAAAACGGAGAGTTTCTTGCCCTCTGGTTCGTTCAAAGTCATTTCAGCTGCCTACGTCTGAAGTAGGACCCGATGACTTGTACATTGTAGAACCTCTAAGGTTTTCTCCAGAGAAAAAGAAGAAGCGCTGCAAGACAAAAGCAGGAGAGCGCGTGGAGACGCTCCGGGCCTCAGCGACGGCTCCTAACGGCCTGCTCAAGCTCAATGGAGAATCCTCACCTCCTCTTCAGTTCCTGCCGTCGACCTGCAACGGCTACACGTCCACCTGCTCGTCCAGAGACTGTGCTTCAGAGGGCAGCTCCGAGAGCTCCGTGTCCACACTGTCAGAGGAGTCGTTCGGCAGCGCCCCTTCAGTGAACGGACATGAGCTTGTTCTATATAACGGAGAGCCTCCGCCAGCCTGCCCTCCAGCCAAGAGCAGGACGGAGAAGAAACGCCGCCGCTCCAGACAGGGAGAGCAGGACAGCATGCTGAGCGCATCGCTGCCCCTGCCCGCGCTGGAGGAGCTCATCAAGGGCAAGACGGAGCTCGGCGTAGCCTCTTTCGGAAGGACAGCAGTCACAGGACGAGTTTGACTTTACATCTCCTTTCCATTTCATCATCATTTTTGAGATTTTATTGTTCACTACACCCCGGTTCTCAGAGCtttggttatgtgcctttttttgAATTCCTTCAGGATCTCGTTAttccctttaagtttttttttttattgttgctggGGATTAAATTATGACACAACGTGAGTATGAATGAGACCATGTTGTTCATGAGCCTCAGGTCTGCTTTCGCATTTTCACTGTCCTGTCAGGCTCTCTTCTGAGTCCTTGTTCATGTGAGATTGTTGACTGTGGTTGGTTTGTGGGACCAGTAATGTCCAGTGAATCGAGCTGAATGAAGAACAGATCCAGTCCTCCTCTTCATTTCACTCTTCTGctcattcattattttcttcTAGAGCCAAGTTACGGCCTGTTTGAATCATAATGTGACCAATGAGTCCAGGCTgggcctgaacacacacacacacacacgcacgcacgcatacaTTGTGACGCACACAAAGTCTCCAGCTCTTCAAGTGTTTACAGCTTATTTTCTCATGTATTTTCTCACTAGTTGAGCCGTCATTTAAAAAACCTTCATGCAGACATGCATCTTcctttttttacacacacacactttcacgtGGGAGTTTGTAGGGGACATTCTGCTATTTTTAGCGctaattatttatctatttatttatttaaaaaatgacctGGGCTCTATGAGATCACGGTCATGTGACATTCGAGATCCCTCCAACCTCCACATTTAGATTTATGatagatccacacacacacacatggtacGGAAAACATTATTCTGTCGTCTCATTTCGGTGTACTATTTGATTTGTTTCACCTTACTAGATCAAATCAGGCTGGAGGTGAATCCATTGCTCGTAATGTGACCAAGGAGATGTCGTACATCATTTTTTAAAGACATCTGGTTGGCTTAGCTTTTCTGGATCTGTTCCGACAGGCTTCGAGTGACTGGAGCTCTCGTCTTTGTGCTAAATATTATGCATGTGTCCGACAAAAGCAACCTGTCCTCTATCACTGTGTGTCTCTCCTCACACACTCCATGTCCCTCTTAACACACTTtatatgtacatgtatgtgtTGTTGCTGCTTTCGTAGTTGTTTTTAATGCACCATTTTGACACCCCAGTGGAGTTTCTCTGAGATTGTAAGTGTTTCCTTCATGCAGGCGAATCACAATATCAGTAAAAGGGAAAGATTGCGATGGTGGACCATCTGTGTGTGATTTCCAGCACACTTGTTCCAGCTTACTACATTTGTTTTTCTGAATGGCAGATATATGTGTGTGGGACTTGTGCTCATGTATGGATGGTTTTCTGTATGTTGTTGAATGAATTGGAGATGAATCTTTCCAGGATGAGAGCGTGTCTCTGCTGTGCACTTTGGAAAACTCCACTAGCCTTTGTGTTTTTCTACACCACACCTTGTACAAGTGCTTTTCTCCACGGGCTTTCCTCAGTATGGCGCCCTCTGGCGGCTGACACCAGACTTATTTAAATGTCCAAGAGGCGCGAAAATAAAGACTCACATTCTGTGGGGACGAACTGCAcagtatttgatttgatttttccAGTTGTAACTACAGCGGCgtagtgccattagaaactgtgaatttataaataaaacactttgtTGTCTTTATTAACTGTGTGATTTTATTATGTCTTATTTCTGTTGACCTGTCTGTCAGTTTATCTAGTCTTATCAGGCGCAGGGGTTCTCAAAATCAATGCCGCACTgctctgtaaaacccaaaaaagttaaggtaacttaaaccatttaaggaaaccgattgcaacaaaccatttaggttcaacaactaatcctaatgagtattgTGAAATTAATCtatgagtaaatgaagcaatttgagcacagtaaaacccaataaatgaagagaactcaaaccaactgagtactgtaaaaataagttTAGGCAACTCaagccatttgaggaaaccgattgcaacaaaccattaaagttaaacaaaaaataataataatatgagtaccgtgaacttactctattaagttgaagtaatgaggtatttaaaaattcttcaaaaagagttcaaaattcttttcaaatgagtagaattaacttttagtcaattttgagtgaactacactcattttgtttatttaataaagttgactgttgggattTACAGTGTGAAATCCGGTGTCTTTACAGATTTTTGATTCAACTTGCCTCAGGACATCTGCAAAGATGCTTTTCGAAAGCCTGtaatagcttgattagctagcccaggtgtgtctgattgggattggagtctgtttgtgtgtgtgtgtgtgtgtagaaaaaTGCAGAATAGCAGATTGAATGATATAAGAAAAAAACTgcgaaataataataaaaaaggtgcGTTTTAGATCTTTTGGGCCTCAAATCATTtgtcaggggtgctcaaccctgctcctggagatctaccttcctgctgagttcagc

Function

GO:

id name namespace
GO:0046850 regulation of bone remodeling biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2941 Predicted to be involved in regulation of bone remodeling. Predicted to be active in cytoplasm and membrane. Orthologous to human SUCO (SUN domain containing ossification factor).

Ensembl:

ensembl_id ENSDART00000187200

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035424 lncRNA downstream 220704 14460099 ~ 14462995 (-) True XLOC_017969
TCONS_00035415 lncRNA downstream 655664 14027314 ~ 14028035 (-) True XLOC_017964
TCONS_00035414 lncRNA downstream 656022 14026853 ~ 14027677 (-) False XLOC_017964
TCONS_00036811 lncRNA downstream 682698 13998311 ~ 14001001 (-) True XLOC_017962
TCONS_00035410 lncRNA downstream 787027 13894918 ~ 13896672 (-) True XLOC_017961
TCONS_00035436 lncRNA upstream 91126 14873030 ~ 14873330 (-) True XLOC_017973
TCONS_00036458 lncRNA upstream 303182 15085086 ~ 15086084 (-) True XLOC_017976
TCONS_00036459 lncRNA upstream 312197 15094101 ~ 15096826 (-) True XLOC_017977
TCONS_00036460 lncRNA upstream 849334 15631238 ~ 15633493 (-) False XLOC_017980
TCONS_00036462 lncRNA upstream 849334 15631238 ~ 15634114 (-) False XLOC_017980
TCONS_00035425 mRNA downstream 2782 14632492 ~ 14680917 (-) False XLOC_017970
TCONS_00035426 mRNA downstream 2802 14635428 ~ 14680897 (-) False XLOC_017970
TCONS_00035427 mRNA downstream 18697 14635478 ~ 14665002 (-) True XLOC_017970
TCONS_00035422 mRNA downstream 220687 14458930 ~ 14463012 (-) False XLOC_017969
TCONS_00035423 mRNA downstream 220704 14459183 ~ 14462995 (-) False XLOC_017969
TCONS_00035433 mRNA upstream 35726 14817630 ~ 14924858 (-) False XLOC_017972
TCONS_00035434 mRNA upstream 36977 14818881 ~ 14925281 (-) False XLOC_017972
TCONS_00035435 mRNA upstream 58498 14840402 ~ 14875308 (-) True XLOC_017972
TCONS_00035437 mRNA upstream 144977 14926881 ~ 14941169 (-) False XLOC_017974
TCONS_00035438 mRNA upstream 155526 14937430 ~ 14941066 (-) False XLOC_017974
TCONS_00035421 other downstream 228073 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 670873 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035409 other downstream 865189 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035395 other downstream 1314356 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 1474947 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035480 other upstream 2860905 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 3002543 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035486 other upstream 3572505 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035494 other upstream 3992225 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035514 other upstream 4761358 19543262 ~ 19545552 (-) False XLOC_018020

Expression Profile

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