RNA id: TCONS_00035433


Basic Information

Item Value
RNA id TCONS_00035433
length 4016
RNA type mRNA
GC content 0.44
exon number 20
gene id XLOC_017972
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14817630 ~ 14925281 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGGGAATTGTTTGTTGAAGCCGGTGATACGTGCCGCCGCATCCTCGTGGCTCTGTAACCATGGGTAACCGGGGGATGGAGGAGCTCATCCCGCTGGTGAACCGGCTGCAGGACGCCTTCAGCGCCATAGGACAAAACTGCGACCTGGACCTACCTCAAATCGCGGTGGTCGGGGGTCAGAGTGCAGGCAAAAGCTCTGTACTGGAAAATTTCGTTGGCAGAGATTTCCTGCCAAGAGGCTCTGGAATTGTTACAAGGAGACCTCTTGTCCTTCAGCTCATCAGTTCAGCTTCAGAGCATGCAGAGTTTCTGCACTGTAAAGGAAAGAAGTTTACAGACTTTGATGATGTCCGACGGGAGATCGAAGCAGAGACAGACAGAGTAACGGGAACAAACAAGGGCATTTCTTCCATTCCCATTAACCTTCGTGTCTTCTCTCCAAATGTGTTGAACCTGACTCTGATAGATCTTCCAGGCATAACTAAAGTGCCAGTGGGAGACCAGCCTGCTGACATTGAATACCAAATCAGAGACATGATCATGCAGTTCATCTGCAAAGAGAATTGTCTCATCCTCGCTGTGACGCCCGCTAACATGGATCTGGCTAACTCTGATGCTCTTAAACTGGCCAAAGACGTGGATCCACAAGGCCATCGCACCATCGGTGTGATCACAAAGCTGGACCTGGTGGACAAGGGCACAGATGTTAGGGACGTGCTGGAGAACAGGTTACTGCCACTGCGCAGAGGTTATATTGGTGTGGTAAATCGTAGTCAGAAGGACATTGAGGGGAAAAAAGACATCAGTGCAGCTCTGGCAGCAGAGAAGCGCTTCTTCAAGTCACATCCAGCATACAGACACATGGCAGACTACATGGGCACTCCATACTTACAGAGACTCCTCAACCAGCAACTTACCAACCACATCCGTGACACGTTACCAGCATTACGTAGTCGACTACAAGCCCAGCTTCTTTCACTGGATAAAGAGGCTGAAGAGTACAAGGGTTTGAATCCAGATGATCCCTCGCGCAAGACCAAGGCTTTAATGCAGCTGATACAGCACTTTGGGCTTGATTTTGAGAAGCGTATTGAGGGATCTGGGGATCAGGTGGATACAGTGCAGCTTTCTGGAGGAGCCAAAATCAACCGCATCTTTCATGAGCGGTTTCCCTTTGAGCTGGTCAAGATGGAGTTTGATGAGAAGGAATTACGAAGGGAGATCAGTTACGCAATTAAAAACATCCATGGCATCAGGACAGGCCTGTTCACACCCGATATGGCGTTTGAAGCCATAGTCAAGAAACAGATTGTAAAACTTAAAGGACCTTGTCTGAAGTGTGTAGACATGGTGATCCAGGAGCTTATCAACACAGTACAGCAGTGTACCAACAAGttAGAGTCTTTTCCAAAATTACGAGAGGAGACTGAGAGGATAGTAACCACTCACATCCGGGAACGAGAAAGTCAAACCAAAGACCAGGTTTTACTCTCATTAGAGATTCAGCTTTCTTACATCAATACCAACCATGAAGATTTTATTGGATTCGCAAACGCTCAACAGAAAACCAGTCAACTGAGCAATAAGCCTTCAGCTGGGAACCAGGTCATTCGCAAAggctgggtaatcatcaacaacaTCAGTCTGATTAAAGGAGGATCCAAGGAGTATTGGTTCGTGCTCACCGCAGAGAGCCTATCCTGGTTTAAAGACGACGAGGAAAAAGAGAAGAAATACATGCTTCCTCTGGACAACTTGAAGGTGCGAGACATAGAAAAGAGCTTCATGTCCAGCAAACATGTCTTTGCCATCTTTAACACAGAGCAGAGGAACGTGTATAAGGACTACAGGCATCTGGAGCTGGCCTGTGACACTCAGGATGATGTGGACAGCTGGAAGGCCTCTCTGCTGAGAGCTGGGGTTTACCCGGAGAAAACCACAGCAGATGGAGATGGTTCAAGCCAGACGGAGAGCTTCTCTATGGACCCTCAGTTGGAGCGTCAGGTCGAGACCATCCGCAACCTGGTGGACTCCTACATGAGCATCGTCTACAAAAGCATCCGAGACCTGATGCCCAAGACCATCATGCATCTTGTCATCAACAATGTAGAAGAGTTCATCCACTCTGAGTTGCTGGCTCAGTTGTATTCTTCAGGAGATCAGTACTCTCTGATGGACGAGTCTCCTGAGCAAGCCTTGCGCAGAGAGGAGGTTCTGCGTACCCATGCTGCCCTGAAAGAGGCTCTGAACATCATCACTGACATCTCCACCACCACCATCTCCACCCCGCTGCCACCTCCCGTAGATAACTCCTGGCTATCCAGTGGCTCGCTTCACCGCAGGTCTCCTAAAGGTTATAGTGTCCCTAAGAAGCATCCAGCTCCAGCTGCTCCATCTCAACACGTTCGCTTGGAAGCTCAGCCTCTACCTGTCTACAACAACAAAGATAACACCAACACCACCAGCCATCCCAAACGAGTCCCTCCTAGTGTTCCCAGGAGACAACCGCCGGCAGTGCCCACTCAacacacacattgacacacaAATGCCCACCTGGGAGACAAAAAGCAACAGTTACAAGATCTGCTTCAAGATTCACAGAAGACAAAAACGATTTGGGTTTAGCAAACCTGATCTCCAGATGCTCACTCATTGTCTTGCTGGAGAGGTTTGTTCATGTTCTGTACATATACATTGATGTCTGCAATGCGAGTGAGTTTCATTGAGTTTCCTTAACAGCAttgaataaaatgctttttttggattttgtaaatAATCTGTGCTCAAAAAGTCATTTGTCTCAGTGGTGTTTAATCAAGTAAGCCATTGATCAACTTGATTTGAACCAACCCATAAACAAATGCTGCTGACTATTTAAATATAGTGGTGTTTCGTGTCGCATATCCAATGACTCTGGTAGCAAGGATGTCTTAgtatattaaaactaaaacatgtgctgcatcccaattcacatacttataCTACGCCTTAAAATTatgtactttttttaaagaaaagtataCACTTTTGAGTGAgtagcagaagagtatgcaagcttcaGCACATACTTCTTACCTGTTAACAGATCAttgtgttgcttagttacgtGCCCTGTAAATCATCCACacttctttcatatttaatttcctatcTTAATGGAGAAGCAGCAGTGGCAGGaggagtctttcatgcagagaagtCTGCTCAAGTTAATGTGCAAACATATCTTCAGGTtcaagttcacattgttgttgcagattaaATATAATATGGAAAACACGGTTTAAATATGTCTTGTTGGCTAGATATTGATAAACAGTAATATAATAATCTTTACTGAAGCCTCGATGGTTGGTCTCGCACATCCGCCATGTTCGTAGTTTCAAATTTACGTCCAACGTGCAAGTACTGTGGGCAATTTCAGCAATTAGAGTGCGGTGGGTTCCACACTTAAAATCTAATGGAAATAGTAAACAATACAGGTACCTTTAGCATActgttttcaacatactatgctttgggacatactaattctattttcaaataccaTTTAGGACGAATAGTTtgcaaattgggatgcagcacaagactaaaactattggtcaaacAACATTTTCATTACctgaaataaaaaattcacaataaatgaaaaaaacaaagtgagggaatgacatccaatgCAGTATAGAGTTttttgttgtattagagataagttatattgattacatattatttatattatttacttaatGCTTTCAGTGTGTTATAACGCCTTGTCaaccagtgataagcacagttattcggcaaaattaacggtaaagtgagcagcgttcatctgacaggtccatttgtgatagcaccctcctaatgaatattggataagatgaaatgaccaagcatccagcctaCAACTATCCCAGTAAAACTCTAAGtcattttacaagagagaagttaaaggcctacaagtctttggatgcctacaattgtgttctgtgtggtcatgtgcaagaaataa

Function

GO:

id name namespace
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process
GO:0098884 postsynaptic neurotransmitter receptor internalization biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0048285 organelle fission biological_process
GO:0031623 receptor internalization biological_process
GO:0061025 membrane fusion biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0000266 mitochondrial fission biological_process
GO:0098844 postsynaptic endocytic zone membrane cellular_component
GO:0030424 axon cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0044327 dendritic spine head cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-76 Predicted to enable GTPase activity and microtubule binding activity. Predicted to be involved in receptor internalization and synaptic vesicle endocytosis. Predicted to act upstream of or within endocytosis. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including microtubule; plasma membrane; and synapse. Is expressed in heart; liver; muscle; nervous system; and neural tube. Orthologous to human DNM3 (dynamin 3).

Ensembl:

ensembl_id ENSDART00000047039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035424 lncRNA downstream 354635 14460099 ~ 14462995 (-) True XLOC_017969
TCONS_00035415 lncRNA downstream 789595 14027314 ~ 14028035 (-) True XLOC_017964
TCONS_00035414 lncRNA downstream 789953 14026853 ~ 14027677 (-) False XLOC_017964
TCONS_00036811 lncRNA downstream 816629 13998311 ~ 14001001 (-) True XLOC_017962
TCONS_00035410 lncRNA downstream 920958 13894918 ~ 13896672 (-) True XLOC_017961
TCONS_00036458 lncRNA upstream 160228 15085086 ~ 15086084 (-) True XLOC_017976
TCONS_00036459 lncRNA upstream 169243 15094101 ~ 15096826 (-) True XLOC_017977
TCONS_00036460 lncRNA upstream 706380 15631238 ~ 15633493 (-) False XLOC_017980
TCONS_00036462 lncRNA upstream 706380 15631238 ~ 15634114 (-) False XLOC_017980
TCONS_00036461 lncRNA upstream 706380 15631238 ~ 15634114 (-) True XLOC_017980
TCONS_00035430 mRNA downstream 35726 14683699 ~ 14781904 (-) False XLOC_017971
TCONS_00035429 mRNA downstream 35726 14683699 ~ 14781904 (-) False XLOC_017971
TCONS_00035428 mRNA downstream 35726 14683699 ~ 14781904 (-) False XLOC_017971
TCONS_00035431 mRNA downstream 35726 14684387 ~ 14781904 (-) False XLOC_017971
TCONS_00035432 mRNA downstream 98829 14699810 ~ 14718801 (-) True XLOC_017971
TCONS_00035437 mRNA upstream 2023 14926881 ~ 14941169 (-) False XLOC_017974
TCONS_00035438 mRNA upstream 12572 14937430 ~ 14941066 (-) False XLOC_017974
TCONS_00035439 mRNA upstream 13093 14937951 ~ 14941046 (-) True XLOC_017974
TCONS_00035440 mRNA upstream 98405 15023263 ~ 15062606 (-) False XLOC_017975
TCONS_00035441 mRNA upstream 117754 15042612 ~ 15062606 (-) True XLOC_017975
TCONS_00035421 other downstream 362004 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 804804 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035409 other downstream 999120 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035395 other downstream 1448287 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 1608878 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035480 other upstream 2717951 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 2859589 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035486 other upstream 3429551 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035494 other upstream 3849271 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035514 other upstream 4618404 19543262 ~ 19545552 (-) False XLOC_018020

Expression Profile

//