RNA id: TCONS_00035438


Basic Information

Item Value
RNA id TCONS_00035438
length 1440
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_017974
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14926881 ~ 14941169 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCAAAACATGTGGGAGAGCCTCATGTCAACGACAGCAACATAGAACAAATTTCATCGGtattacctgacaaataaatccTTGATTGTCTGCTCCGTCAGCATGAGTTTGTTACCTCGCACCGCTGAGGAGTTCAGCTCAGCGGATTACTGGGAGCGCTTTTTCCGTAAGAGAGGAGAGAAGGCGTTTGAGTGGTACGGAGACTACAACTCACTCTGCGGGGTTCTGCATAAATACATCAAACCACGAGATAAGGTATTGGTGGTGGGCTGTGGTAACTCTGAACTCAGTGAACAGCTCTATGATGTTGGCTACCGTCAGCTGACCAACATTGACATCAGCGAGACGGTGGTCTCCCATATGAACCAGAGGAATGCAGAGCGCCGTCCAGACCTCTCCTTCCAGCAGCTGGATGCCACCCAGACCGGCTTCGAGAGCGGGAGCTTTCAGGTGACTCTGGATAAAGGCACTCTGGACGCCATGGCTTCAGAAGAGGATGGTGCTCTTGCAGGCCGGATGCTGGCAGAGGTTGGCAGAGTTTTGGCTGTGGGCGGGAGGTATGTCTGCATAACGTTAGCCCAGGAGCATGTCATAAAGTTAGCAGTGGAGCATTTTGTTAAGGGATGGGCAGTGAGAGTACATTGTCTAACCGGACAACAGAACGAAGAGTCCGATTCCTCCTTTGCACTCCCCGTttttgtgttggtttgcactAAGTTTCGACAAGCCCCTCCATTTGCTGTTCTTGAGCTGTGCCAGGGGGAGGATGGCGCTCCGGCTAGACTGGCATCAGTAGAGGAGCTGCTGTCTGCAGTCAAGGAGAGGCAGGCTTATAATCTAATGCTGCATAAACTCAGAGGAGGAACAGACTCAAGCAGCACACCCTCACTCACGCTGTGCCACGCAGCCAGCGGACGCCCACGGTACACTCTGACCATACAGGACGGCCCACCTTCTGCTAAGACCCCGCGGAGCAATCACTTCGCCATCTTTATTGGTGAGCGTTAGGTTTTATTTTATAGAGTGCAACATAGTGGTCCATAttgtatcatttcagcatcgatatcgcaatgtgtgattCTGCAATAGTTGATCAGTAGTTGAACAGTTCAGAACGTGTGATTTGTGGGGTCATCTCAAGGTTTAACCCTAAAATAGAAcgaaagatttttatttgtatgtgtttttaaaaccTGGGACTatgtaagatttaagattttaagattttaaaattaattgcatttaattatttatacaatgaaaacactatacagtgttattttatctattattgaatttctgtacctcaGTACTGTTAGATTTCACAGAAAAGCAAACAATGAATTTGTATTTGTTCAATTGTACTTTATCCAGACATTTTCCCTGTACAAAATAACCCCAATTCATGTAAAAATGTGAATTATATTGCAGACAATGAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032259 methylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-060929-60 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain and inner ear. Orthologous to human METTL13 (methyltransferase 13, eEF1A lysine and N-terminal methyltransferase).

Ensembl:

ensembl_id ENSDART00000152516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035436 lncRNA downstream 64100 14873030 ~ 14873330 (-) True XLOC_017973
TCONS_00035424 lncRNA downstream 474435 14460099 ~ 14462995 (-) True XLOC_017969
TCONS_00035415 lncRNA downstream 909395 14027314 ~ 14028035 (-) True XLOC_017964
TCONS_00035414 lncRNA downstream 909753 14026853 ~ 14027677 (-) False XLOC_017964
TCONS_00036811 lncRNA downstream 936429 13998311 ~ 14001001 (-) True XLOC_017962
TCONS_00036458 lncRNA upstream 144020 15085086 ~ 15086084 (-) True XLOC_017976
TCONS_00036459 lncRNA upstream 153035 15094101 ~ 15096826 (-) True XLOC_017977
TCONS_00036460 lncRNA upstream 690172 15631238 ~ 15633493 (-) False XLOC_017980
TCONS_00036462 lncRNA upstream 690172 15631238 ~ 15634114 (-) False XLOC_017980
TCONS_00036461 lncRNA upstream 690172 15631238 ~ 15634114 (-) True XLOC_017980
TCONS_00035434 mRNA downstream 12149 14818881 ~ 14925281 (-) False XLOC_017972
TCONS_00035433 mRNA downstream 12572 14817630 ~ 14924858 (-) False XLOC_017972
TCONS_00035435 mRNA downstream 62122 14840402 ~ 14875308 (-) True XLOC_017972
TCONS_00035428 mRNA downstream 155526 14683699 ~ 14781904 (-) False XLOC_017971
TCONS_00035440 mRNA upstream 82197 15023263 ~ 15062606 (-) False XLOC_017975
TCONS_00035441 mRNA upstream 101546 15042612 ~ 15062606 (-) True XLOC_017975
TCONS_00035442 mRNA upstream 142921 15083987 ~ 15089738 (-) False XLOC_017976
TCONS_00035443 mRNA upstream 143385 15084451 ~ 15090862 (-) False XLOC_017976
TCONS_00035444 mRNA upstream 152543 15093609 ~ 15104709 (-) False XLOC_017977
TCONS_00035421 other downstream 481804 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 924604 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035409 other downstream 1118920 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035395 other downstream 1568087 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 1728678 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035480 other upstream 2701743 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 2843381 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035486 other upstream 3413343 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035494 other upstream 3833063 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035514 other upstream 4602196 19543262 ~ 19545552 (-) False XLOC_018020

Expression Profile

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