RNA id: TCONS_00035473


Basic Information

Item Value
RNA id TCONS_00035473
length 251
lncRNA type antisense
GC content 0.33
exon number 2
gene id XLOC_017993
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 16883555 ~ 16883922 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAACAAGCTcgtacatatatttaaaaaaatttaatggaAATGAACTCATTTGAAAGTTAATCAACTGCGAACTAGATTGTCAAaaaatttaacagtattttatttattaagtttcaaAAGTTTTCCTAAATTAAAGTGTTAACAAATTGTCAAATATACCGTACCTTTGCGTCTACATCTGCCCCAAGCTGGACCAGACTCTCCACCATGGACAGATGTGACTGAACTCACCGCTGTAGTTAGGGAAGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141741

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036812 lncRNA downstream 21779 16853093 ~ 16861776 (-) True XLOC_017992
TCONS_00035470 lncRNA downstream 140256 16742002 ~ 16743299 (-) True XLOC_017990
TCONS_00035467 lncRNA downstream 429952 16447779 ~ 16453603 (-) True XLOC_017988
TCONS_00035465 lncRNA downstream 526195 16356267 ~ 16357360 (-) True XLOC_017987
TCONS_00035463 lncRNA downstream 660388 16214845 ~ 16223167 (-) True XLOC_017985
TCONS_00036813 lncRNA upstream 1132540 18016462 ~ 18019306 (-) True XLOC_018000
TCONS_00036463 lncRNA upstream 1306594 18190516 ~ 18195318 (-) True XLOC_018001
TCONS_00035483 lncRNA upstream 1422827 18306749 ~ 18313807 (-) True XLOC_018002
TCONS_00036814 lncRNA upstream 1503937 18387859 ~ 18388619 (-) True XLOC_018005
TCONS_00036815 lncRNA upstream 1664368 18548290 ~ 18550782 (-) True XLOC_018007
TCONS_00035471 mRNA downstream 34193 16830415 ~ 16849362 (-) False XLOC_017991
TCONS_00035472 mRNA downstream 34249 16835052 ~ 16849306 (-) True XLOC_017991
TCONS_00035468 mRNA downstream 334643 16477570 ~ 16548912 (-) False XLOC_017989
TCONS_00035469 mRNA downstream 384564 16478162 ~ 16498991 (-) True XLOC_017989
TCONS_00035466 mRNA downstream 429953 16437741 ~ 16453602 (-) False XLOC_017988
TCONS_00035474 mRNA upstream 464 16884386 ~ 16906767 (-) False XLOC_017994
TCONS_00035475 mRNA upstream 4639 16888561 ~ 16906623 (-) True XLOC_017994
TCONS_00035476 mRNA upstream 62210 16946132 ~ 16972446 (-) False XLOC_017995
TCONS_00035477 mRNA upstream 64765 16948687 ~ 16972351 (-) True XLOC_017995
TCONS_00035478 mRNA upstream 154981 17038903 ~ 17041025 (-) True XLOC_017996
TCONS_00035421 other downstream 2427929 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 2870729 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035409 other downstream 3065045 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035395 other downstream 3514212 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 3674803 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035480 other upstream 758887 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 900525 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035486 other upstream 1470487 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035494 other upstream 1890207 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035514 other upstream 2659340 19543262 ~ 19545552 (-) False XLOC_018020

Expression Profile

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