RNA id: TCONS_00035479


Basic Information

Item Value
RNA id TCONS_00035479
length 2473
RNA type mRNA
GC content 0.43
exon number 1
gene id XLOC_017997
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 17257101 ~ 17259573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGAACCCGCGGCTCGCGAGCCGCTTGCGGCTCTTTTACTGCTCTTGTGCGGCTCAACCTCTCGCGCGATTTAACATACATTAACCAATtgactaacgccccattcacacggtgCTTCTGCGTCTCTTTCTGCTTTTGTGCGCCTCAACCTCTTGCGCGATTTAACATATAATAACCAATTgactaatgccccattcacacggggcttcacgttgctcgctgcagaagctgggagtagctcaacttttcaagcgcttaCGGAcgcgttagccaatcagatcgctgtatgcaaatacacctgctagaaagtggcctattgctgactgaattttattttctGCCGCTTccattcagacacgccttcagtcaagggttgacactgaagccccgttTGATTGGGGCGCAACACGAGTGACGTGCAGTTCGTTAATATCAATCGTCATGGCAGAGTCAGGAAAGCGTACAGCTAAGCGTAAATACGAAGATGAGCGCAGAACATTTTTATCTGAATGGGaggatttatatttttttgttgaaagaAATGGAAAGCCATTCTGCTTGATATGCCAGACTTCGTTGTCACATTTTAAGGCTTCAAATCTCGAGCGCCATTTCACCTCTCTCCATTCTGCCGTAGCCCGGGAATTTCCCAAAGGCAGTGAACTTCGCAAGCACAAGGTAAAGACACTGAAAGGTCAGGCAGAAAAGCAAACTCAGCTTTTCCGAAAATTTAGTAAGCATTCAGAGACGGTCACATTAGCATCATATCAGCTAGCATGGAACATTGCTCGTGCAAAAAAGCCATACCTTGAAGGAGAATTTGTTAAAAAGTGCCTCAGTGATGCTGTTGCTATTCTTTGTCCCGAAAATGAAAATTTGAAACGTTCAGTAAAGGACCTTCAACTGTCACGACACACTGTTGAACAGAGAATATCGGACATTGACAATTCAGTAGAAACACATTTACTGTCAGATCTTCAGAAGTGCCAGTATTTTAGCATTGCGTTGGATGAGTCATGCGATGTTCAAGACAAGCCACAATTTGCAATATTTGTACGGTTTGTGTCAGAAGACTGCACAATTAGGGAAGAGCTGCTTGACATAGTGCCGCTGAAAGACAGAACTCGTGGCATCGATCTGAAAGAGACACTGATGACTGTTGTTGAGAAAGCAAATCTGCAGTTATCAAAACTAACAGCCATAGTCACGGACGGAGCTCCAGCCATGCTGGGATCTGAGAGAGGTCTTGTAGGGCTGTGTAAAGCTGACGACCGTTTTCCAGCATTTTGGACTTTCCACTGTATTATCCATCAAGAGCACTGGGTGTCTAAAAAGCTAAACTTAGACCACATTATGAAACCTGTGCTGGAAATTGTCAATTTTGTACGCACACATGCTCTCAATCACAGACAGTTCAAAAATCTCATTGATGAACTTGATGAAGACCTTCCATCTGATCTGCTTTTTCACTGTGCCGTGCGATGGCTTTCAAGAGGACATGTGCTTTCTCGTTTCTTTGAGCTTTTGAATCCAGTGAAGCTGTTCCTCGCAGAGAAACATAAGGAATATCCTGAGCTACATGATCCCCAGTGGATTTCAGATTTGGCTTTTTTGGTTGACGTGCTGCATTATCTGAATGGACTGAATGTGGATCTGCAAGGGAAGTTAAAGATGCTGCCTGACCTGGTGCAAAGTGTTTTTGCATTTGTCAACAAACTCAAGCTGTTCAAGACACATCTACAAAAGAGAGACTACACACATTTTCCAACCTTGTTGAAGGCAAGTGGACAAAAAGCAGAGGTTGTAAAAGGGAGTACTGCACGGTATGCTACGCTGCTTGAAAATCTTGAGCAAAGTTTTGAGGAAAGATTCTCCAACCTACAACAAAAAAGACAACAGATAACATTTTTGATCAACCCATTCACTGCTGAATCAGGCTGTTTAAAAGCCCCTTTAGTGGAAGATGAAGCAGCATCTCAGCTTGAAATGATTGAACTTTCTGAGGATGACAGACTTAAAAGTGTCCTGAGGGAAGGAACCGTGGAGTTTTGGAAGATTGTGCCCGTTGAGAGATATCCCAATGTCAAACAGGCTGCACTCAAACTGTTGTCAATGTTTGGGTCAACTTATGTCTGTGAATTACTTTTTTCGACACTGAAACTAGTGAAATCAAAGCATCGCTCTGTTCTTACTGACACACATGTGAAAGAGTTACTACGAGTAGCCACAACTGAATACGAGCCAGACCTGAAAAAGATTGTGGAAACCAAGGAATGTCAGGTGTCCCACTGAGTCAAGTAAAATGAGGTAGGCTAATTTAAATCCATGAAAACTATTGCGTTATATAATTAGGTGTATAAGTTATTGTGACAGATATACTGTTGTTTGCGCATCTGTTGTGTGGCTCTTTGCagtgataaagttttttttttggctcatcaTGCCAAACAGGTTCGCCACCCCtgcactata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166397

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035473 lncRNA downstream 373179 16883555 ~ 16883922 (-) True XLOC_017993
TCONS_00036812 lncRNA downstream 395325 16853093 ~ 16861776 (-) True XLOC_017992
TCONS_00035470 lncRNA downstream 513802 16742002 ~ 16743299 (-) True XLOC_017990
TCONS_00035467 lncRNA downstream 803498 16447779 ~ 16453603 (-) True XLOC_017988
TCONS_00035465 lncRNA downstream 899741 16356267 ~ 16357360 (-) True XLOC_017987
TCONS_00036813 lncRNA upstream 756889 18016462 ~ 18019306 (-) True XLOC_018000
TCONS_00036463 lncRNA upstream 930943 18190516 ~ 18195318 (-) True XLOC_018001
TCONS_00035483 lncRNA upstream 1047176 18306749 ~ 18313807 (-) True XLOC_018002
TCONS_00036814 lncRNA upstream 1128286 18387859 ~ 18388619 (-) True XLOC_018005
TCONS_00036815 lncRNA upstream 1288717 18548290 ~ 18550782 (-) True XLOC_018007
TCONS_00035478 mRNA downstream 216076 17038903 ~ 17041025 (-) True XLOC_017996
TCONS_00035476 mRNA downstream 284655 16946132 ~ 16972446 (-) False XLOC_017995
TCONS_00035477 mRNA downstream 284750 16948687 ~ 16972351 (-) True XLOC_017995
TCONS_00035474 mRNA downstream 350334 16884386 ~ 16906767 (-) False XLOC_017994
TCONS_00035475 mRNA downstream 350478 16888561 ~ 16906623 (-) True XLOC_017994
TCONS_00035482 mRNA upstream 1046549 18306122 ~ 18313864 (-) False XLOC_018002
TCONS_00035484 mRNA upstream 1085945 18345518 ~ 18351510 (-) True XLOC_018003
TCONS_00035485 mRNA upstream 1093197 18352770 ~ 18382892 (-) False XLOC_018004
TCONS_00035487 mRNA upstream 1094839 18354412 ~ 18382745 (-) False XLOC_018004
TCONS_00035488 mRNA upstream 1110546 18370119 ~ 18382708 (-) True XLOC_018004
TCONS_00035421 other downstream 2801475 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 3244275 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035409 other downstream 3438591 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035395 other downstream 3887758 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035393 other downstream 4048349 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035480 other upstream 383236 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035481 other upstream 524874 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035486 other upstream 1094836 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035494 other upstream 1514556 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035514 other upstream 2283689 19543262 ~ 19545552 (-) False XLOC_018020

Expression Profile

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