RNA id: TCONS_00036816


Basic Information

Item Value
RNA id TCONS_00036816
length 2234
lncRNA type intronic
GC content 0.31
exon number 1
gene id XLOC_018008
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 18565758 ~ 18569419 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagatgcagaaacttttgacatatgaattcatcttgactaagggtaatgtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagttttattaatttttttattttattgcaacactAAGTTGTCCATTCTGTGGCCAATATGATATAAAGGGCCTAAAATGGGACTGACGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcctactatgtatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagttaaactgttcctttaacccaatctagttgactttactagaaaATTGTATAGAAACCCAGTGGCTTAAACCTCTTACATTTTATACAAGGTACAACTTAACTGCCgtacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggATTTAAGACAACATGTTTCTATGCAGTTTTctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatattttagggtgaagcacagtatgctgttgtagttttcatataattgaggagtcaaacatgagatgtgttttaaattgcaagacgtgaattaacaatatgttcatcaagattcaaatcttgcatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgtgaaggataagggtgttcataatgagaagtgcagttactatcctgatctctgagtttgtagaactgacagatctgcttggaataaatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttaatgacactttacatatataaataaatatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatgttgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattgctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcgccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgattttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036815 lncRNA downstream 14976 18548290 ~ 18550782 (-) True XLOC_018007
TCONS_00036814 lncRNA downstream 177139 18387859 ~ 18388619 (-) True XLOC_018005
TCONS_00035483 lncRNA downstream 251951 18306749 ~ 18313807 (-) True XLOC_018002
TCONS_00036463 lncRNA downstream 370440 18190516 ~ 18195318 (-) True XLOC_018001
TCONS_00036813 lncRNA downstream 546452 18016462 ~ 18019306 (-) True XLOC_018000
TCONS_00035498 lncRNA upstream 368464 18936455 ~ 18942965 (-) False XLOC_018012
TCONS_00036817 lncRNA upstream 369898 18937889 ~ 18939754 (-) True XLOC_018012
TCONS_00035500 lncRNA upstream 601941 19169932 ~ 19174123 (-) True XLOC_018014
TCONS_00035505 lncRNA upstream 814436 19382427 ~ 19385077 (-) True XLOC_018017
TCONS_00035511 lncRNA upstream 951441 19519432 ~ 19521883 (-) False XLOC_018019
TCONS_00035490 mRNA downstream 29284 18393383 ~ 18536474 (-) True XLOC_018006
TCONS_00035489 mRNA downstream 30256 18391860 ~ 18535502 (-) False XLOC_018006
TCONS_00035485 mRNA downstream 182866 18352770 ~ 18382892 (-) False XLOC_018004
TCONS_00035492 mRNA upstream 153320 18721311 ~ 18736281 (-) False XLOC_018009
TCONS_00035493 mRNA upstream 155895 18723886 ~ 18731268 (-) True XLOC_018009
TCONS_00035495 mRNA upstream 207815 18775806 ~ 18794789 (-) False XLOC_018010
TCONS_00035496 mRNA upstream 208294 18776285 ~ 18789543 (-) True XLOC_018010
TCONS_00035497 mRNA upstream 233534 18801525 ~ 18915376 (-) True XLOC_018011
TCONS_00035486 other downstream 183406 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035481 other downstream 781190 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035480 other downstream 922835 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035421 other downstream 4110132 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 4552932 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035494 other upstream 206138 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035514 other upstream 975271 19543262 ~ 19545552 (-) False XLOC_018020
TCONS_00035515 other upstream 975388 19543379 ~ 19543462 (-) True XLOC_018020
TCONS_00035516 other upstream 976657 19544648 ~ 19544746 (-) True XLOC_018021
TCONS_00035518 other upstream 1205369 19773360 ~ 19773475 (-) True XLOC_018024

Expression Profile

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