RNA id: TCONS_00035496


Basic Information

Item Value
RNA id TCONS_00035496
length 1350
RNA type mRNA
GC content 0.53
exon number 10
gene id XLOC_018010
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 18774129 ~ 18794789 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGACAGAGCCAGGTATCGTGTCTCCGTTCAAGCGGGTGTTTCTGAAAGGGGAGAAGGGTAGGGATAAGAAGGCTCTGGAGAAGTCCACTGAACGCAGGGCCCTCCacaccttctctctctctctcccagacCACCGTATCGACCCAGATATTCTGCTCAATGACTACATCGAGAAGGAAGTTAAGtATCTGGGACAGCTGACCTCAGTTCCTGGATACCTGAATCCCTCCAGCCGCACTGAAGTTCTGCAGCTCATTGACAATGCCAGGAAGTCTCATCAGTTGGCTGGGCAGCTGACCTCAGAGCAGGATGCTGTTGTCAGTTTATCAGCGTACAATGTGAAGCTTGTGTGGCGTGATGGAGAGGACATCATTCTGCGCGTACCCATCCACGACATTGCAGCTGTGTCCTACATCAGAGACGACTCGCTTCATCTAGTGGTGCTAAAAACAGCTCAGGAGCCCGGAGGTTCCCCATGTCATAGTACAGAGATGTCGAAATCTCCCACTCTGAGCTCTCTATCTGAGAGTGGGGCTGTGCTGGTGGAGGTCTGCTGTCTGCTTGTGCTGGCTGTTGACAACAAGGCTGCAGCAGAGGAGCTCTGTCTTCTACTCAGTCAAGTCTTCCAGATCGTCTATACCGAGTCCACCATCGACTTCCTAGACAGGGCCATCTTTGATGGAGCCACAACACCCACCAGGCATCTCTCAATCTATAGTGAAGACTCCTCAAGTAAAGTTGATGTCAAAGATGTGTTTGAGGCCGAGGCAAGCACATTCTCGTTCCAGAGTTCTCTAGAGGCGGGACATTCCTCTAGCCCCTCCCCCACCTCGGCCCCGGCCTCGCCACAAACCAAAACAGCCAGTGAGAGCGAACTGAGCACAACAGCTGCTGAACTGCTGCAAGACTACATGACCACATTGAGGACAAAGCTTTCGTCCAAAGAGATCCAGCAGTTTGCCACACTGTTACATGAATACAGAAACGGCGCCTCCATCCATGAGTTCTGTATCAACCTGCGGCAGCTTTATGGAGACAGCAGGAAGTTCCTTCTCCTCGGACTGCGGCCGTTCATCCCCGAGAAGGACAGCCAGCATTTTGAGAACTTTCTGGAGACCATCGGCGTGAAGGATGGCCGCGGAATCATCACAGACAGTTTCGGCCGTTATAAGCGCACGACGAGCTCTGCGTCTGACTCCACCACGAACGGAAACGGTGCTGCGGGCGGATCAGATGAGGGAACAGCCACCTCTGAGGGCGACGAATGGGACCGCATGATTTCAGACATAAGCAATGACATTGAAGCCTTAGGAAGCAGCATGGATCAAGACGGCGTGCCATCTTGA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007275 multicellular organism development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0001570 vasculogenesis biological_process
GO:0060047 heart contraction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040712-6 Acts upstream of or within several processes, including cell-cell junction assembly; circulatory system development; and heart contraction. Predicted to be located in cytoplasm. Is expressed in several structures, including cardinal system; heart; intermediate cell mass of mesoderm; liver; and ventricular zone. Human ortholog(s) of this gene implicated in cerebral cavernous malformation 2. Orthologous to human CCM2 (CCM2 scaffold protein).

Ensembl:

ensembl_id ENSDART00000182240

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035491 lncRNA downstream 206866 18565758 ~ 18569419 (-) True XLOC_018008
TCONS_00036816 lncRNA downstream 208294 18565758 ~ 18567991 (-) False XLOC_018008
TCONS_00036815 lncRNA downstream 225503 18548290 ~ 18550782 (-) True XLOC_018007
TCONS_00036814 lncRNA downstream 387666 18387859 ~ 18388619 (-) True XLOC_018005
TCONS_00035483 lncRNA downstream 462478 18306749 ~ 18313807 (-) True XLOC_018002
TCONS_00035498 lncRNA upstream 146912 18936455 ~ 18942965 (-) False XLOC_018012
TCONS_00036817 lncRNA upstream 148346 18937889 ~ 18939754 (-) True XLOC_018012
TCONS_00035500 lncRNA upstream 380389 19169932 ~ 19174123 (-) True XLOC_018014
TCONS_00035505 lncRNA upstream 592884 19382427 ~ 19385077 (-) True XLOC_018017
TCONS_00035511 lncRNA upstream 729889 19519432 ~ 19521883 (-) False XLOC_018019
TCONS_00035492 mRNA downstream 40004 18721311 ~ 18736281 (-) False XLOC_018009
TCONS_00035493 mRNA downstream 45017 18723886 ~ 18731268 (-) True XLOC_018009
TCONS_00035490 mRNA downstream 239811 18393383 ~ 18536474 (-) True XLOC_018006
TCONS_00035489 mRNA downstream 240783 18391860 ~ 18535502 (-) False XLOC_018006
TCONS_00035487 mRNA downstream 393540 18354412 ~ 18382745 (-) False XLOC_018004
TCONS_00035497 mRNA upstream 11982 18801525 ~ 18915376 (-) True XLOC_018011
TCONS_00035499 mRNA upstream 185447 18974990 ~ 19011956 (-) True XLOC_018013
TCONS_00035501 mRNA upstream 487389 19276932 ~ 19365875 (-) False XLOC_018015
TCONS_00035502 mRNA upstream 488647 19278190 ~ 19366022 (-) False XLOC_018015
TCONS_00035503 mRNA upstream 491503 19281046 ~ 19366022 (-) True XLOC_018015
TCONS_00035486 other downstream 393933 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035481 other downstream 991717 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035480 other downstream 1133362 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035421 other downstream 4320659 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035412 other downstream 4763459 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035514 other upstream 753719 19543262 ~ 19545552 (-) False XLOC_018020
TCONS_00035515 other upstream 753836 19543379 ~ 19543462 (-) True XLOC_018020
TCONS_00035516 other upstream 755105 19544648 ~ 19544746 (-) True XLOC_018021
TCONS_00035518 other upstream 983817 19773360 ~ 19773475 (-) True XLOC_018024
TCONS_00035521 other upstream 1062200 19851743 ~ 19864103 (-) True XLOC_018025

Expression Profile

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