RNA id: TCONS_00036821


Basic Information

Item Value
RNA id TCONS_00036821
length 712
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_018020
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 19543143 ~ 19546588 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCCCACTTCTCTCTTCCTAAAGCAGCCATTGAAATGGGGTGTAAAAGTGGAGCAGCGGGTGTAGGGTGTCTTGGGGCCAGTGTGAACAGCTGAGAGGTGTGATTTCACGGCTCTGATTGGGCTGGACAGCAGGCCCCAGATCCTAAAGGACACCAACAGGTGGAGCAGCGCGGGGCCGAGGGGGAGTATAAGGGACGGCGAGCACTTGAAAAGCCCAGGAGCGAGTGGCCACGTCTGGACAGAAACCAACAGCCACGCAAAGAGGACGGTACACTGTAGCACTCAGAAGAAGAGGAGAGATGTGGACTGAGAGGTAAGCGAGGAGAACAGTTTGCTGAAGATTGTCAACATAGGCTCTGTTAGTCTTCTTCCGTCTCTTTCTGAAGCAACACGCCTTGCTGTGGCTGGTCAAATGGAACCAAGTCAGGTGTTTCTGCGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATACAGCCTACATATAGACCAAAGATTAAAAGAGAGTATACATCTGCTTAAAATGCTCTAACACTgtcttttttgaaaaataaaataatgttcaaTAAACTATTTTACTGCTGCAATGTTGTGTTCATTTCCTTCTTAATTATAATTGAAGAAATTATTTGATAATGAGCATTCAGTCCCTAAGCTTGCATTCAGTGtctctttaaaaatatatgcacTTAATTAAATTCATCTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0030239 myofibril assembly biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035513 lncRNA downstream 10604 19525350 ~ 19532539 (-) True XLOC_018019
TCONS_00035511 lncRNA downstream 21260 19519432 ~ 19521883 (-) False XLOC_018019
TCONS_00035505 lncRNA downstream 158066 19382427 ~ 19385077 (-) True XLOC_018017
TCONS_00035500 lncRNA downstream 369020 19169932 ~ 19174123 (-) True XLOC_018014
TCONS_00036817 lncRNA downstream 603389 18937889 ~ 18939754 (-) True XLOC_018012
TCONS_00036822 lncRNA upstream 189186 19735774 ~ 19789010 (-) True XLOC_018023
TCONS_00035529 lncRNA upstream 772533 20319121 ~ 20324703 (-) True XLOC_018029
TCONS_00035532 lncRNA upstream 795160 20341748 ~ 20355448 (-) True XLOC_018030
TCONS_00035537 lncRNA upstream 881740 20428328 ~ 20582383 (-) False XLOC_018032
TCONS_00036823 lncRNA upstream 941228 20487816 ~ 20582501 (-) True XLOC_018032
TCONS_00035508 mRNA downstream 10486 19494273 ~ 19532657 (-) False XLOC_018019
TCONS_00035509 mRNA downstream 10543 19512622 ~ 19532600 (-) False XLOC_018019
TCONS_00035510 mRNA downstream 10612 19516654 ~ 19532531 (-) False XLOC_018019
TCONS_00035512 mRNA downstream 12392 19521313 ~ 19530751 (-) False XLOC_018019
TCONS_00035506 mRNA downstream 31443 19436187 ~ 19511700 (-) False XLOC_018018
TCONS_00035517 mRNA upstream 33247 19579835 ~ 19590378 (-) True XLOC_018022
TCONS_00035519 mRNA upstream 280791 19827379 ~ 19864131 (-) False XLOC_018025
TCONS_00035520 mRNA upstream 280792 19827380 ~ 19858936 (-) False XLOC_018025
TCONS_00035522 mRNA upstream 418266 19964854 ~ 20182871 (-) False XLOC_018026
TCONS_00035523 mRNA upstream 546635 20093223 ~ 20111934 (-) True XLOC_018026
TCONS_00035494 other downstream 766650 18774129 ~ 18776493 (-) False XLOC_018010
TCONS_00035486 other downstream 1160791 18354409 ~ 18382352 (-) False XLOC_018004
TCONS_00035481 other downstream 1758575 17784447 ~ 17784568 (-) True XLOC_017999
TCONS_00035480 other downstream 1900220 17642809 ~ 17642923 (-) True XLOC_017998
TCONS_00035421 other downstream 5087517 14454908 ~ 14455626 (-) True XLOC_017968
TCONS_00035518 other upstream 226772 19773360 ~ 19773475 (-) True XLOC_018024
TCONS_00035521 other upstream 305155 19851743 ~ 19864103 (-) True XLOC_018025
TCONS_00035528 other upstream 772235 20318823 ~ 20324569 (-) False XLOC_018029
TCONS_00035531 other upstream 781293 20327881 ~ 20331768 (-) False XLOC_018030
TCONS_00035544 other upstream 1270641 20817229 ~ 20821789 (-) False XLOC_018037

Expression Profile

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