RNA id: TCONS_00035524


Basic Information

Item Value
RNA id TCONS_00035524
length 4975
RNA type mRNA
GC content 0.40
exon number 13
gene id XLOC_018027
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 20229586 ~ 20270191 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTATGTCTTCAGCAGCCACCACAGCCCCGTCGGTGGACAAGGTGGACGGCTTCTCCAGGAAGTCTGTCAGGAAAGCCCGGCAGAAGCGAGCGCAGAGCTCATCCCAGTTCAGATCTCAGGACAAGCCCATAGAGCTGGTGGCGCTGCCTCTGCTGAAAGATGTTTCTGCGCAGGAGCAACCGGAGCTGTTCCTCAAGAAGCTGCAGCAGTGCTGTACTCTGTTTGACTTCATGGATACTCTGTCTGACCTCAAAATGAAAGAGTATAAACGTTCCACCCTTAATGAGCTGGTGGACTACGTCACACTCAGCCGCGGTTACCTGACCGAGCAGACCTACCCTGAGGTGGTCAAAATGgtgtcctataatatttttcgGACTCTTCCGCCCAGTGACAGTAACGAGTTTGACCCAGAGGAAGACGAGCCCACGCTGGAAGCCTCATGGCCACACTTACAGctTGTTTATGAGTTCTTCATCCGTTTCTTGGAAAGTCAGGAATTTCAGCCCAGCGCTGCCAAAAAATACATCGATCAAAAATTTGTTTTACAGCTCTTAGAGCTGTTTGATAGCGAGGACCCACGAGAGAGGGACTGTCTGAAGACAGTTCTGCACAGAATCTACGGCAAGTTCCTTGGCCTCAGGGCCTTCATCCGCAAACAAATTAACAACATTTTTCTTTGTTTTGTGTATGAGACAGAGCGCTTCAATGGCGTAGCTGAACTGCTGGAGATTTTGGGAAGCATCATCAATGGTTTTGCGCTTCCTCTCAAAGCTGAGCACAAACAGTTCTTGGTGAAGGTGCTGCTGCCTCTGCACACAGTGAGGAGCTTATCTCTCTTCCATGCCCAGCTGGCCTATTGTATTGTACAGTTCCTAGAGAAAGACCCCACGTTAACAGAACCTGTGATCAGAGGTTTGTTGAAGTTTTGGCCAAAAACATGCAGTCAAAAGGAGGTTATGTTTCTTGGAGAGTTGGAGGAGATTCTAGATGTGATTGAACCCACTCAGTTTGTTAAGATCCAGGAGCTGCTCTTCAAACAGATTGCTAGATGTGTTTCCAGTCCCCATTTTCAGGTGGCAGAGCGAGCCTTGTACTACTGGAACAATGAGTACATCATGAGTCTGATTGAGGAGAACTGTAGCGCCATCCTGCCTATCATGTTTGCCAGTCTCTACAGGATCTCCAAAGAGCACTGGAACCCGGCGATCTCAGCTTTGATCTACAATGTGCTCAAAGCATTCATGGAGATGAACAGCGCCTTGTTTGACGAACTTGCAGCCAGTTACAAATCAGACAGGCAAAGGGAAAGGAAGAAGGACAAGGAGCGTGAGGACCTGTGGAGGAAGCTGGAGGATCTGGAGCTCAGACGGGGCATCCAAAACAGCGACGGCGTCATTCCCACTTAACACAGACCTCGGCTCCGCCCCTCTGTGTGGCCACCAACCAATCCCTTTCTACTCTGCCACAGGGACCCACCCCCCTCTCTTTGCTTCTCATGCTGCGTACTTTACCGCACACTCCCTTGTTCATTTCCTCCCTTTCAACAGCACTGTAAATAACCCTCTCCCTCTTTCCTGTATCATACTACTACtctgaaagaaagaagaaaaaaaagctaatttgaaGAGAGACTTAATGTGCACTCctcattgtaaaaaaatctggTAAAATGATAATCAACTATGGTCAAAGGATATATTTTAAAAACCCTTTCGGTTCAGCGTCTTCATGTCGATGTTGTTCTCCAAGGAAGTGCCCTGGGACTTTGGGGTCTGTGCTCACCCTGCGATTTAAAGATGTCTTATATTCGAGGATCCTGTCGTTGCCGCCAATTTTTCAGTTCTTTATGAAGAGAGACTTTAACATCTAGACTCCCCTGACTCTGGGGAAACAAACCAGAAACCCATGATGTGAATATGAGGAAAACAGGAGATAACGAACATCTATCATCTTCTCTGTCGTGtgctttgtttccttttttttttttttttacaggatgaTCAGCCCAGTCTTTCACTGTACAGTATGGACTGGTTCTTGTAAGCATCCAGGATGGGTCGCATTAAGCTACTGTGGGTCAATAAAGAGGACAAACCTCTCCGAggacctttatttttttaaacatgtgaacCAGGTAAATATACTGATCTGGTCATAGTTTCATGCTGTCTGCTGTGGAGACTCTTGGGAATTCCAGTGTGGAAATTCTGTAGTCACCAAGAGTAGCAAGGACTCATGGAAATTCAGCGGCGCACAGTGTTTTCAGAGCTCATCCAGTGTTTTTAAAATCGTTAAgtgatacatatatatttttcgtAAAGAATATTCTGGACTGCTTCTCACAGGCCACCCAGATTTCCACCACTCTGCTCTGTTTAAGTTTCGAATTCACAAAGGTTGGACGTGGTCTACATAACAGAGCTGAGCAAGacaaggtttttctttttctttcatggAGTGTTTGAAATGAAATCCTGCTTCTGTTGGGGTTTATAGGGCCTGTGTAGGTAAACGCTGATCCGGGAGGTTAGAATCTTTCTTCTGAAATAAATACCAGCCGCCAAGGCAGGCTAGAACTTAAAAAGCACTTCGAGTTAGGGTTCATTAGTTGTTCTGGTGGGACTTCAGCCCCTcccttttcttctttatttttatttgaagtcCCAACAATCGTGGTTGTGGATTTTACATGTGAGGAggatgtattttattatattttattttattattttggctTAATCacgtgtctctctttctctcttccttGTTTTAACTCTCCCAAGCTCATTGTGTGTTTTATGATGGCCCAAGTTtgatatgtaaaaacaaaaaatcaaaagaaaGGGTTTGATGAATAGAATaaatctaattattttaaaaaagaaagagataTTAAATAAACCTGTTTTTGTGATAAATGGCTtacttgcattattttttttattgtaaatatacatATGGAACAAAAGGTTTCAAAAAAGCACTTTTACCATGCTGGTCTAAACAACCCATAATGCATAGCGCTTTCCTTATATGACCTCTTTATTTATAACACACTAACAAAAATAGAAATCCTGAAGGCAAAGATAGCAGGAGAAATAATGTGCTGTTTCATTCCAGTAGGTGGCATTAGGCTCATACCAACCACTCAGAGATAATAGTTCACTTCAACAGAGCAGAGAAATAAAAAGGACTGTTGCTGTTCTTAATCTTATCAAGCTAGTGATTTGTAATGAGATTCCATAAGATTGGCATCAGGTATTCAGATTTacaaattatattacaaataacATGGAATAATTGAGGATTTCCTGGTATATTTAATAATTagttcaataaataaatgtagaaaaaacaaaactgtcaAATGAGATATAATGCACTGCCTtaagttattatttttcttctatgaatgaaatattaaacttttttttctgtgtcATGGATTTTGTGAATGTATGGGCTGGCCAGCTTACACCATTTCAGAGGATTTTTCTGATTCTTGAAGCAgtgtttgttaaaagtgttaatgcACAGTAGAGATCAAGAGAACAACCaaaaataactacattttgaGGTCACTGCTTAGTCCTTCATGCAGTTTCTTCACTGGagtaaaattgcatttttaaaagcatatttaatgagagatttattttgaaatacaatataaaaattgaaagatatatttacaaaaacagtGGTCAAAAATGAGAAAACACTTTCAGATCATTTCAGTTTTTGGTGTTAATCTGCCTTCAGGTGGGAAATTCATTCTTTTACAAATCAGATTGATCTGGTAGCCTCACTTTACCATTATCACCTTTGTGAGCCACTCTAAAGACTGAAACCCTCAGAGCAGATTGATCAGATTAAGGCAAAACGGACCCTTTCAGCTTGGTCATTGCATATGAGTTTCATAATATTGCATATGCCACTAACTAGATAATGTACAAAAGTGCAGGATATTAAAGAGAATCACAATTGGCAATCAGTTCAACAATGCAAAAAAGAATTGCTCAGCATTTCAGTACTTAACATGGCATTGATCTCTGTGCTGTCCCAATGTCCTCTGCATTCATCACTCAACCATTTTCATGCAGGATAATGAGTATGACCCTAACAAAACTGATAAAACTGTTCCTTATGCTGAAAacattaaattaatgaaatgttCCAGAGTACTGACCTAAACCAAAAGATTGAAAATCTCTGGAAAATCCTTACCTACAAAGTTATAGCTAAGAGACACTACTAGAGAAGTTTCAATTTGATTAATCCTTCTTTCTCTATTCTATGTAgatcaggggtctgttcttcctATACGTGAATTACTCAGTTAGCTGAATTTCGGTTATTGGTGATTTGCAAcggttctggtagctcaaacctgctcaggagctggctcatttcatataaacaggattagatcgggtcagttcaagcaaaggttatactgaaagtatgtactgaatgccgatatcttcttacagtagtaacctataggttatatacacttgggaaaatagtcaAATAGGTTAAGAAATGTATATGCACATTTATAATTTAGAATAattagtaatattaaataatcaaTATTTATGCTTGTATGCATATATGGGGTGGTTCTCCCCAAGGGGATCCAAGAGAACATTTaataatatggactttttagataTGTACGCATACTATTTTAAGGTACCGACCCAGCcttacaatttgtgtatgataataaaaAGTGCACAATATTcgactgttttttttgtttgtttgtttattttaaaaaaggaataataatttatgcagaaATGCATATCTTTCGATCGCTAATATACTGGTGATTTAATGCTTTGCagaagttgcagacacctttaccaatatcaaaatgcttttttgatgcaaaattaatttaaattcacaGATTAAGAAACTTTAATAGGCCTAGGCTGCTAAAATAAAGGATATCCact

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0031952 regulation of protein autophosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0005634 nucleus cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030904-7 Predicted to enable protein phosphatase activator activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Is expressed in female organism. Orthologous to human PPP2R5E (protein phosphatase 2 regulatory subunit B'epsilon).

Ensembl:

ensembl_id ENSDART00000183234

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036822 lncRNA downstream 440576 19735774 ~ 19789010 (-) True XLOC_018023
TCONS_00036821 lncRNA downstream 682998 19543143 ~ 19546588 (-) False XLOC_018020
TCONS_00036820 lncRNA downstream 683019 19543143 ~ 19546567 (-) False XLOC_018020
TCONS_00036819 lncRNA downstream 683228 19543143 ~ 19546358 (-) False XLOC_018020
TCONS_00036818 lncRNA downstream 684956 19543143 ~ 19544630 (-) False XLOC_018020
TCONS_00035529 lncRNA upstream 70713 20319121 ~ 20324703 (-) True XLOC_018029
TCONS_00035532 lncRNA upstream 93340 20341748 ~ 20355448 (-) True XLOC_018030
TCONS_00035537 lncRNA upstream 179920 20428328 ~ 20582383 (-) False XLOC_018032
TCONS_00036823 lncRNA upstream 239408 20487816 ~ 20582501 (-) True XLOC_018032
TCONS_00035541 lncRNA upstream 363484 20611892 ~ 20613584 (-) False XLOC_018035
TCONS_00035522 mRNA downstream 46715 19964854 ~ 20182871 (-) False XLOC_018026
TCONS_00035523 mRNA downstream 117652 20093223 ~ 20111934 (-) True XLOC_018026
TCONS_00035519 mRNA downstream 365455 19827379 ~ 19864131 (-) False XLOC_018025
TCONS_00035520 mRNA downstream 370650 19827380 ~ 19858936 (-) False XLOC_018025
TCONS_00035517 mRNA downstream 639208 19579835 ~ 19590378 (-) True XLOC_018022
TCONS_00035526 mRNA upstream 26593 20275001 ~ 20312789 (-) True XLOC_018028
TCONS_00035527 mRNA upstream 66166 20314574 ~ 20324792 (-) False XLOC_018029
TCONS_00035530 mRNA upstream 78203 20326611 ~ 20355577 (-) False XLOC_018030
TCONS_00035534 mRNA upstream 111929 20360337 ~ 20402500 (-) False XLOC_018031
TCONS_00035533 mRNA upstream 111929 20360337 ~ 20402500 (-) False XLOC_018031
TCONS_00035521 other downstream 365483 19851743 ~ 19864103 (-) True XLOC_018025
TCONS_00035518 other downstream 456111 19773360 ~ 19773475 (-) True XLOC_018024
TCONS_00035514 other downstream 684034 19543262 ~ 19545552 (-) False XLOC_018020
TCONS_00035528 other upstream 70415 20318823 ~ 20324569 (-) False XLOC_018029
TCONS_00035531 other upstream 79473 20327881 ~ 20331768 (-) False XLOC_018030
TCONS_00035544 other upstream 568821 20817229 ~ 20821789 (-) False XLOC_018037
TCONS_00035546 other upstream 568827 20817235 ~ 20821781 (-) False XLOC_018037
TCONS_00035557 other upstream 1083606 21332014 ~ 21332128 (-) True XLOC_018040

Expression Profile

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