Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035531 |
| length | 842 |
| RNA type | processed_transcript |
| GC content | 0.54 |
| exon number | 5 |
| gene id | XLOC_018030 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 20326611 ~ 20355577 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051402 | neuron apoptotic process | biological_process |
| GO:1905517 | macrophage migration | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0045765 | regulation of angiogenesis | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0071456 | cellular response to hypoxia | biological_process |
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:0009749 | response to glucose | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-706 | Enables chromatin binding activity and transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including hematopoietic stem cell differentiation; macrophage migration; and motor neuron axon guidance. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including cardiovascular system; digestive system; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carcinoma (multiple); diabetic retinopathy; myocardial infarction; prostate cancer; and type 2 diabetes mellitus. Orthologous to human HIF1A (hypoxia inducible factor 1 subunit alpha). |
| ensembl_id | ENSDART00000152759 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00035529 | lncRNA | downstream | 3178 | 20319121 ~ 20324703 (-) | True | XLOC_018029 |
| TCONS_00036822 | lncRNA | downstream | 538871 | 19735774 ~ 19789010 (-) | True | XLOC_018023 |
| TCONS_00036821 | lncRNA | downstream | 781293 | 19543143 ~ 19546588 (-) | False | XLOC_018020 |
| TCONS_00036820 | lncRNA | downstream | 781314 | 19543143 ~ 19546567 (-) | False | XLOC_018020 |
| TCONS_00036819 | lncRNA | downstream | 781523 | 19543143 ~ 19546358 (-) | False | XLOC_018020 |
| TCONS_00035532 | lncRNA | upstream | 9980 | 20341748 ~ 20355448 (-) | True | XLOC_018030 |
| TCONS_00035537 | lncRNA | upstream | 96560 | 20428328 ~ 20582383 (-) | False | XLOC_018032 |
| TCONS_00036823 | lncRNA | upstream | 156048 | 20487816 ~ 20582501 (-) | True | XLOC_018032 |
| TCONS_00035541 | lncRNA | upstream | 280124 | 20611892 ~ 20613584 (-) | False | XLOC_018035 |
| TCONS_00036824 | lncRNA | upstream | 280124 | 20611892 ~ 20613628 (-) | True | XLOC_018035 |
| TCONS_00035527 | mRNA | downstream | 3089 | 20314574 ~ 20324792 (-) | False | XLOC_018029 |
| TCONS_00035526 | mRNA | downstream | 15092 | 20275001 ~ 20312789 (-) | True | XLOC_018028 |
| TCONS_00035525 | mRNA | downstream | 57690 | 20231638 ~ 20270191 (-) | True | XLOC_018027 |
| TCONS_00035524 | mRNA | downstream | 79473 | 20229586 ~ 20248408 (-) | False | XLOC_018027 |
| TCONS_00035522 | mRNA | downstream | 145010 | 19964854 ~ 20182871 (-) | False | XLOC_018026 |
| TCONS_00035534 | mRNA | upstream | 28569 | 20360337 ~ 20402500 (-) | False | XLOC_018031 |
| TCONS_00035533 | mRNA | upstream | 28569 | 20360337 ~ 20402500 (-) | False | XLOC_018031 |
| TCONS_00035535 | mRNA | upstream | 28569 | 20360337 ~ 20410029 (-) | False | XLOC_018031 |
| TCONS_00035536 | mRNA | upstream | 31715 | 20363483 ~ 20410127 (-) | True | XLOC_018031 |
| TCONS_00035538 | mRNA | upstream | 199234 | 20531002 ~ 20533865 (-) | True | XLOC_018033 |
| TCONS_00035528 | other | downstream | 3312 | 20318823 ~ 20324569 (-) | False | XLOC_018029 |
| TCONS_00035521 | other | downstream | 463778 | 19851743 ~ 19864103 (-) | True | XLOC_018025 |
| TCONS_00035518 | other | downstream | 554406 | 19773360 ~ 19773475 (-) | True | XLOC_018024 |
| TCONS_00035514 | other | downstream | 782329 | 19543262 ~ 19545552 (-) | False | XLOC_018020 |
| TCONS_00035544 | other | upstream | 485461 | 20817229 ~ 20821789 (-) | False | XLOC_018037 |
| TCONS_00035546 | other | upstream | 485467 | 20817235 ~ 20821781 (-) | False | XLOC_018037 |
| TCONS_00035557 | other | upstream | 1000246 | 21332014 ~ 21332128 (-) | True | XLOC_018040 |
| TCONS_00035565 | other | upstream | 1507736 | 21839504 ~ 21862904 (-) | False | XLOC_018042 |
| TCONS_00035566 | other | upstream | 1566203 | 21897971 ~ 21910134 (-) | True | XLOC_018042 |
