RNA id: TCONS_00035535


Basic Information

Item Value
RNA id TCONS_00035535
length 5324
RNA type mRNA
GC content 0.41
exon number 13
gene id XLOC_018031
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 20360337 ~ 20410127 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAATTCAACGGATATTTGAGACTGCATATTCGCGAGGCGGTGGATTTAAAACCGACGAGGTTTTCAACTCGACACACATTTAATAGGAAAATCCAGTTGGATCCTTACATCGTTGTTAAAGTCGACAATGTAAAACATGCGAAGACCGCCACAAAACCGAAGACCAACAAACCGACTTTCAATGAGGAGTTCTGCCCGTACATCTCCAACGGTGTGGAGCTGGAGCTGGCTGTTTTCCACAGCACTCGTTTAGGATACGACACGTTTGTGGCTAATTGCAGAATCCAGCTTAAGGAAATCACAACGACACCAGGCACAAAGCCAAAATTTGAAGGATGGGTCAATCTGGAACCAGAGGGAAGTGTGTATATATTCATCACTCTCACCGGCTCCTTTACAGATGATGAAGCTGTGAATATTGTGAAAACCCATAAAGAGTTTGTAAGGAAAAAGGTTTTGAAAAGAAGAAAGGTCCACCAAATCTACGGACATAAGTTTATGGCAACCTTCCTCCCCCAGCCCACGTTTTGCTACCATTGCAAAAACTTCATTTGGGGTGTTATTGGAAAGCAAGGTTATCAGTGTCAAGTTTGTACATGTGTGGTCCATAAGAGGTGCCATGCCTTGGTTGTTACTGAGTGTCCACGAATGAGGAAAGATGCAAATGAGGGCCAAAGACAAGGCTTCAGCATCAACTTACCGCACCAGTTCAAAGAGCACAACTACAAAGTTCCCACATACTGTAACCACTGTGGATCTCTACTATACGGGCTGGTGAAACAAGGGCTCCACTGCAAGATTTGTAAGATGAACATCCACAAACGCTGTGAACAAAATGTCGCACCTAATTGTGGAGTGGACAATGCTGAGCTGGCCAGCAAACTGTCAGAGATTGGACTGCTCAACACAATCTCCAAACGAAAGTCTCAGGGTTCGCTGCACATGTCAAGTGTAAGGAGTCAGAGCTCCACTACTAGCATAGAGACAACTGAGGAGGAGTCAGATGAGGAGGCTGTAAAAGTTTGCCTGGAAGATTTCAGTTTCTTGCAGGTGCTGGGGAAAGGAAGCTTTGGCAAGgtgATGTTGGCTCGTCTAAAAAGTGACCACAGGGTCTTTGCTGTGAAAATGCTAAAGAAAGATGTCATATTGCAAGAAGACGATGTCGAAGCAACCATGACTGAGAAGAGAGTGCTGACTCTGGCCCACCAGCATCCGTTTCTCACACAGCTCTACTACTGCTTTCAGACTACGGAGCGGTTATTCTTCGTCATGGAGTTTGTGAATGGTGGCGACCTCATGTTTCACATCCAGAAGTGCAGGCGGTTCGATGAGCCACGAGCCCAGTTTTATGCTGCCGAAGTCACTTCAGCCCTCAAGTTTCTTCATTCCAAAGGCATCATCTACAGAGACCTGAAACTGGACAATATTCTCCTAGACAGGGATGGCCACTgcaaactggcagatttcggcATGTGCAAAGAGGAAATCTTCAATGGCAAACTAACAAGTACCTTTTGTGGCACTCCAGATTACATTGCACCTGAGGTGAGCATCACtaaaagtgtatgtgtgtttgtgcgtgttgtTTGCCTGTCGATGTTTTATTCTGTGCGTCTCTTTCAGATCCTCCAGGAGGAGCTGTATGGCGTATCGGTGGACTGGTGGGCTCTTGGAGTGCTACTTTATGAGATGCTGTCTGGTCATGCTCCATTTGAAGCAGAGACTGAAGACGAGCTGTTTGAGTGCATCCTCAAAGAcgaaatcatttattcatcctggCTCAGCTATGAGGCCGAGGACATCCTTAAAGGATTGCTCACCAGAGACCCAGCCTGTCGGTTGGGCTGCATAGACAATGATGGAGGAGAAGAGGCCATTACTGCACACGCCTTCTTTACAGGCCTGGACTGGGAGAAACTGTACAGACGAGAGATCACACCACCTTTCACACCTCGAATAAATTCCATCGAGGATGTGAACAACTTTGACCCTGACTTCACCCAAGAGGACCCCTGTCTCACACCCATAGAGGAAAGCCTTTTCCCGTTCCATCAGGACGGTTTTAAAGACTTTAGCTACATAGCTCCAGAACTGAGGCACAACTGACATCAGCCATAGATTATTTATTGTTCCTTCATAAATTACTATCCCAATGACCTCCAACAAGGAAGCTTGTTGTAAGATACTTTGTTGACAGACTTGTTGCTAAGTCTTAAAAATATGAACATGTTCCAACCTGTTTAAAAGACCAAATGATCGTACAGACCACAGGATTGTTTGTCACAGTGACTGAAAGAATATGATGCCTTCTATAATCAACAAGTGCTTTTTTTCTATCTACACAGTCAAACTTGCATTGTTTTTTGTACTAGTATCTGTTGTTAGCATGATAATATGAAGGAAAGTGTTTCGCCATTCAGCTTTATAGTAAGAATAGGAACAAATTTACAACAAATAACATACAATAGGCTATGTTTAAGTAATGAACTTTTACATAAAAACAGGCCATTTTGGATTAGCTATACAGCATGTGACAACCATATCACCTGTCCAGTTCATTGAATAATGAATCAGACAAGCTGTGGCGTAAATGAAACTTTCAtgagaaaaacaaacatatacaacATATCCTTTACACCCCGAAGGACACAGTGCTACGGTCATGTCACATTTCTCTATGCTCGTGCAAATCCTCCATGAATAATGTATGAGCCTCGATTGATTTGTTGTTCTCTCACAGTCTATTTGATGCCCTGATAAAGCAGTGTTTACCAGTGCTGCACACTGTTAATGAGGGTACAACTCTATaatgaacataaaatatttaaattaaggtCTTTTCTAAAACACCGCGTCACTTCCATTTCATTTAGTGATTGTAGGTTATACAACTGAGCCGAAGGCCTCGTTCTTGACatccctttgtttttgttttttaattgagcTGTGCATCTGAGATGTAGCTTGAAGGGATTGTTTACGGTTCAAGTACCCAATTGTTTGAATGTTACCCAATAAGGGTTTTTACGCAGTTCACTCAAACCAGTTGTAGCTGGTAACTCGGTGACacattttatttgttagttttggcATCATAGTCTGGCAGACAATAGCAAAGATAGTTAATGAAGTAATGGCCAACATATTTGCACTTAGTCTGTTCATTTTTCTATCAAGAATTGTATTTTTCTTATAAGTTCCATTTTCCAGAACCCAAGATATGATGAGGAGCTTATGTTGGAAATGAATGAGAGGATTTAAAAGTTATGTACAGGtcgtctttaaaaaaatgaataaataagttgatacatttagcttttttgtttaatatttgaagTATTTATTCTCCAGTCTTATGATGTATTCACTGTTTTCCTACACCCCATAATGCTTAGTGTAATGCATGGAAGAAACTTCCACTAATGTGTAAGCATGTAaccaatcaatatatatatattactttataaataacatataacacatgttatacactcaccggccactttattaggtacaccttactaatattGGGTCGGAATAGAGATCTGTGCGGGACAAAATTTTTAATCCTGCTCCTGTCAGGTTTTAGTCCGAACCTGACCGCTCCTGTTTATATTCAGCATTCAGACAGCctttaacaagctgtctgtataaacacacacacatagacacacagcatcacgctctcgctcattcacacacatacacaaacatagacagcaccaagctctctctctcattcacacacataggcagcaacaaacaagcgacacacagcatcacgctttctcattcacacaaatacatacgcgtgctcgctcgctctgGAGTCAGGGGTGATATTTTTAGACTGCCCTCTCCCGTTCAAATTAGACCAGTTACCAACCGCTCTgcactttattcggaaattttTTCCCGCGCCACAAGAAATGTGGTCGGGTCCCACGGCCCCGTGTCTTCATTACTGACAtaatcctttgtggcagagatttaacaaggtactggaaatattcagcAGAGAAttaggtccatattgacataatagcatcacgcagttcctgcagatttgtcagctacacatccatgatgtgaatctccagttccaccacatcccataggtgttctattggattgagactgtggaggacatttgtgtataatgaactcattgtcatgttcaagaaaccagtctgagatgattcacgctttatgacatggcgcgttatcctgctggaagtagccatcagaagatgggtacacagaggtcataaagggatggacatgcaTGAAGGGAgtatcagcaacaatactcaggcaggctgtgacgtggacacaatgctcaattggtactaatgggcccaaagtgtaccaaattctgaccctaccattcaaatgtcAGACTTTTGGAGCAGGTATTTTCCCCTTCAACTGTAAGGGCCTCTCATAATCTAAAACCAAACACAAAAATGTGGATAATATAAGTTACACTACTATTTTGTTAACATGATTATTTTCTTCTTGTGGTTACACGCTATTGAAACAGTATTGTAGCATTTCAGAATTGACCCTTTTTTAACCACAACACTGTAAGTTTTACTGTATCTCTTTACTGTAGCCCTCCTGTGACTTgtttatgcattttcaaatatttcccatgtgctatttaaaggagagaagatttttgatcacatttgtaaacataatagttttaataactaataactaaattattttgtctttgctatgatgacagtacataatattttaggtTAGCTGGGTTAATTAGATGAATAAGCATTAATGCTTTGAACAACAATGGTCTGTAGCCTATATGAAAAAAGGGGGCAAACATATTgactaaattaaaaaagtaaaataaatgctgctttctcaagaagaaaaaatctaaaggaattactgtaaaaatgtcttgctctgttaattatCACTAAATACCACTAAAATtttacaggagagctaataattttaccATCAGCTGTATTTCAATATTTCAGAGCCATTTCCTCCTGtcagtaaaataaaatagagCTGAGCTTTCATTGATGGTGTGTGAAATGTAGTCAGGTGCTCTGGTGAATTTCCCAGACTTATTGTATTAAACTGCCAAAAACCAGCCATGTCTGGTTGGGAGGCGTCTTCATGACTCAGAGCCTTCATTGAGTCAGAACTGCTGAGAAGTTCACCGGGTTCCTCCAGCCAAAATGTGCCAAAGGTTTTGCATTAATTTTAGCAGTTCAAATTCAAAAGTTAATGGTATTGGCAAGCAGATTAAGCTCTTACTGGAAATGGTGTTTTTAGAT

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function
GO:0004698 calcium-dependent protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-104 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human PRKCH (protein kinase C eta).

Ensembl:

ensembl_id ENSDART00000192177

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035532 lncRNA downstream 4889 20341748 ~ 20355448 (-) True XLOC_018030
TCONS_00035529 lncRNA downstream 35634 20319121 ~ 20324703 (-) True XLOC_018029
TCONS_00036822 lncRNA downstream 571327 19735774 ~ 19789010 (-) True XLOC_018023
TCONS_00036821 lncRNA downstream 813749 19543143 ~ 19546588 (-) False XLOC_018020
TCONS_00036820 lncRNA downstream 813770 19543143 ~ 19546567 (-) False XLOC_018020
TCONS_00035537 lncRNA upstream 18299 20428328 ~ 20582383 (-) False XLOC_018032
TCONS_00036823 lncRNA upstream 77787 20487816 ~ 20582501 (-) True XLOC_018032
TCONS_00035541 lncRNA upstream 201863 20611892 ~ 20613584 (-) False XLOC_018035
TCONS_00036824 lncRNA upstream 201863 20611892 ~ 20613628 (-) True XLOC_018035
TCONS_00036825 lncRNA upstream 271287 20681316 ~ 20690788 (-) True XLOC_018036
TCONS_00035530 mRNA downstream 4760 20326611 ~ 20355577 (-) False XLOC_018030
TCONS_00035527 mRNA downstream 35545 20314574 ~ 20324792 (-) False XLOC_018029
TCONS_00035526 mRNA downstream 47548 20275001 ~ 20312789 (-) True XLOC_018028
TCONS_00035525 mRNA downstream 90146 20231638 ~ 20270191 (-) True XLOC_018027
TCONS_00035524 mRNA downstream 111929 20229586 ~ 20248408 (-) False XLOC_018027
TCONS_00035538 mRNA upstream 120973 20531002 ~ 20533865 (-) True XLOC_018033
TCONS_00035539 mRNA upstream 190942 20600971 ~ 20610812 (-) False XLOC_018034
TCONS_00035540 mRNA upstream 190945 20600974 ~ 20611063 (-) True XLOC_018034
TCONS_00035542 mRNA upstream 406718 20816747 ~ 20821785 (-) False XLOC_018037
TCONS_00035543 mRNA upstream 406899 20816928 ~ 20821783 (-) False XLOC_018037
TCONS_00035531 other downstream 28569 20327881 ~ 20331768 (-) False XLOC_018030
TCONS_00035528 other downstream 35768 20318823 ~ 20324569 (-) False XLOC_018029
TCONS_00035521 other downstream 496234 19851743 ~ 19864103 (-) True XLOC_018025
TCONS_00035518 other downstream 586862 19773360 ~ 19773475 (-) True XLOC_018024
TCONS_00035516 other downstream 815591 19544648 ~ 19544746 (-) True XLOC_018021
TCONS_00035544 other upstream 407200 20817229 ~ 20821789 (-) False XLOC_018037
TCONS_00035546 other upstream 407206 20817235 ~ 20821781 (-) False XLOC_018037
TCONS_00035557 other upstream 921985 21332014 ~ 21332128 (-) True XLOC_018040
TCONS_00035565 other upstream 1429475 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035566 other upstream 1487942 21897971 ~ 21910134 (-) True XLOC_018042

Expression Profile

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