RNA id: TCONS_00035541


Basic Information

Item Value
RNA id TCONS_00035541
length 592
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_018035
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 20611892 ~ 20613628 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTTCCGGTCTGGGTGACTTTAAGCGGAGGTGAACAGTATTATGACAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCCGTCAGAAGATCCATGACATCGTCTGCTAGTTTATAGCTCCTGCTCTTGTGTGGCTGAGAGTGGGATTTGCAAACATTTGGTTGCTTTGCTTTTCCAGACAGCCCATTactctgaaatgtgtaatgtgagttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagagaggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTCATTTTTTCTgttcatctgaataaaatatttttttcaaaatgtt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036823 lncRNA downstream 29391 20487816 ~ 20582501 (-) True XLOC_018032
TCONS_00035537 lncRNA downstream 29509 20428328 ~ 20582383 (-) False XLOC_018032
TCONS_00035532 lncRNA downstream 256444 20341748 ~ 20355448 (-) True XLOC_018030
TCONS_00035529 lncRNA downstream 287189 20319121 ~ 20324703 (-) True XLOC_018029
TCONS_00036822 lncRNA downstream 822882 19735774 ~ 19789010 (-) True XLOC_018023
TCONS_00036825 lncRNA upstream 67732 20681316 ~ 20690788 (-) True XLOC_018036
TCONS_00035547 lncRNA upstream 203986 20817570 ~ 20821144 (-) False XLOC_018037
TCONS_00035548 lncRNA upstream 204570 20818154 ~ 20821762 (-) False XLOC_018037
TCONS_00035549 lncRNA upstream 206899 20820483 ~ 20821787 (-) True XLOC_018037
TCONS_00035554 lncRNA upstream 315255 20928839 ~ 20930559 (-) False XLOC_018039
TCONS_00035540 mRNA downstream 829 20600974 ~ 20611063 (-) True XLOC_018034
TCONS_00035539 mRNA downstream 1080 20600971 ~ 20610812 (-) False XLOC_018034
TCONS_00035538 mRNA downstream 78027 20531002 ~ 20533865 (-) True XLOC_018033
TCONS_00035536 mRNA downstream 201765 20363483 ~ 20410127 (-) True XLOC_018031
TCONS_00035535 mRNA downstream 201863 20360337 ~ 20410029 (-) False XLOC_018031
TCONS_00035542 mRNA upstream 203163 20816747 ~ 20821785 (-) False XLOC_018037
TCONS_00035543 mRNA upstream 203344 20816928 ~ 20821783 (-) False XLOC_018037
TCONS_00035545 mRNA upstream 203645 20817229 ~ 20821789 (-) False XLOC_018037
TCONS_00035550 mRNA upstream 283038 20896622 ~ 20901540 (-) False XLOC_018038
TCONS_00035551 mRNA upstream 283466 20897050 ~ 20901558 (-) True XLOC_018038
TCONS_00035531 other downstream 280124 20327881 ~ 20331768 (-) False XLOC_018030
TCONS_00035528 other downstream 287323 20318823 ~ 20324569 (-) False XLOC_018029
TCONS_00035521 other downstream 747789 19851743 ~ 19864103 (-) True XLOC_018025
TCONS_00035518 other downstream 838417 19773360 ~ 19773475 (-) True XLOC_018024
TCONS_00035516 other downstream 1067146 19544648 ~ 19544746 (-) True XLOC_018021
TCONS_00035544 other upstream 203645 20817229 ~ 20821789 (-) False XLOC_018037
TCONS_00035546 other upstream 203651 20817235 ~ 20821781 (-) False XLOC_018037
TCONS_00035557 other upstream 718430 21332014 ~ 21332128 (-) True XLOC_018040
TCONS_00035565 other upstream 1225920 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035566 other upstream 1284387 21897971 ~ 21910134 (-) True XLOC_018042

Expression Profile

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