RNA id: TCONS_00035546


Basic Information

Item Value
RNA id TCONS_00035546
length 791
RNA type nonsense_mediated_decay
GC content 0.52
exon number 6
gene id XLOC_018037
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 20816747 ~ 20821789 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTATCAGTCTTTGTGTGGTTTCTGGTGGACTTTAGGAAGGATTAATTCCGCTTTCCCAAAGAAAATCGGTATAAGGTAGACGCAATCATGCCTTTCGGTAACACTCACAATCTGCTGAAGATGAACTACTCCGCCGAGCAGGAGTATCCCGACCTCACCAAGCACAACAACCACATGGCGAAGATGACCTTGACCCCAACTACGTTCTGAGCTCCAGAGTACGAACCGGCAGGAGCATCCGCGGCTTCTGCCTCCCCCCTCATTGCAGCCGTGGGGAGAGACGCGGTATCGAGAGTCTGTCTGTCGAGGCTTTGGGGGCTCTTGATGGTGATCTCAAAGGAAAGTACTACGCCCTCAAGGACATGACGGAGGAGGAGCAGCAGCAGCTGATTGATGACCACTTCCTGTTTGATAAGCCTGTGTCTCCACTGTTGCTGGCCTCTGGGATGGCCCGTGACTGGCCTGATGCCAGGGGGATCTGGCACAATGACAATAAGACATTCCTAGTGTGGGTGAATGAGGAAGACCATCTACGTGTCATCTCCATGCAGAAAGGTGGCAACATGAGGGAAGTCTTCAATCGCTTCTGCACAGGCCTCACaaagATTGAGGAACTGTTTAAAGAGAAGGGCCATGAGTTTATGTGGAACGAGCACTTGGGCTACGTCTTAACCTGCCCCTCCAACCTGGGCACAGGGTTGCGTGGTGGCGTTCATGTCAAACTCCCTAACGTAAGCAAGCATGAGAAGTTTGGTGAGATTCTTAAGCGACTCCGGCTTCAAAAGCGTG

Function

GO:

id name namespace
GO:0046314 phosphocreatine biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005615 extracellular space cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004111 creatine kinase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020103-2 Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in extracellular space. Is expressed in several structures, including fin bud; nervous system; neural tube; prechordal plate; and trigeminal placode. Orthologous to human CKB (creatine kinase B).

Ensembl:

ensembl_id ENSDART00000152118

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036825 lncRNA downstream 126447 20681316 ~ 20690788 (-) True XLOC_018036
TCONS_00036824 lncRNA downstream 203607 20611892 ~ 20613628 (-) True XLOC_018035
TCONS_00035541 lncRNA downstream 203651 20611892 ~ 20613584 (-) False XLOC_018035
TCONS_00036823 lncRNA downstream 234734 20487816 ~ 20582501 (-) True XLOC_018032
TCONS_00035537 lncRNA downstream 234852 20428328 ~ 20582383 (-) False XLOC_018032
TCONS_00035554 lncRNA upstream 107058 20928839 ~ 20930559 (-) False XLOC_018039
TCONS_00035567 lncRNA upstream 1177375 21999156 ~ 22015295 (-) True XLOC_018043
TCONS_00036826 lncRNA upstream 1221729 22043510 ~ 22070176 (-) False XLOC_018044
TCONS_00035568 lncRNA upstream 1246379 22068160 ~ 22070094 (-) True XLOC_018044
TCONS_00036464 lncRNA upstream 1567335 22389116 ~ 22432496 (-) False XLOC_018048
TCONS_00035540 mRNA downstream 206172 20600974 ~ 20611063 (-) True XLOC_018034
TCONS_00035539 mRNA downstream 206423 20600971 ~ 20610812 (-) False XLOC_018034
TCONS_00035538 mRNA downstream 283370 20531002 ~ 20533865 (-) True XLOC_018033
TCONS_00035536 mRNA downstream 407108 20363483 ~ 20410127 (-) True XLOC_018031
TCONS_00035535 mRNA downstream 407206 20360337 ~ 20410029 (-) False XLOC_018031
TCONS_00035550 mRNA upstream 74841 20896622 ~ 20901540 (-) False XLOC_018038
TCONS_00035551 mRNA upstream 75269 20897050 ~ 20901558 (-) True XLOC_018038
TCONS_00035552 mRNA upstream 106046 20927827 ~ 20932782 (-) False XLOC_018039
TCONS_00035553 mRNA upstream 106382 20928163 ~ 20932760 (-) False XLOC_018039
TCONS_00035555 mRNA upstream 107409 20929190 ~ 20931197 (-) False XLOC_018039
TCONS_00035531 other downstream 485467 20327881 ~ 20331768 (-) False XLOC_018030
TCONS_00035528 other downstream 492666 20318823 ~ 20324569 (-) False XLOC_018029
TCONS_00035521 other downstream 953132 19851743 ~ 19864103 (-) True XLOC_018025
TCONS_00035518 other downstream 1043760 19773360 ~ 19773475 (-) True XLOC_018024
TCONS_00035516 other downstream 1272489 19544648 ~ 19544746 (-) True XLOC_018021
TCONS_00035557 other upstream 510233 21332014 ~ 21332128 (-) True XLOC_018040
TCONS_00035565 other upstream 1017723 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035566 other upstream 1076190 21897971 ~ 21910134 (-) True XLOC_018042
TCONS_00035579 other upstream 2088417 22910198 ~ 22910312 (-) True XLOC_018054
TCONS_00035581 other upstream 2259879 23081660 ~ 23081796 (-) True XLOC_018057

Expression Profile

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