RNA id: TCONS_00036827


Basic Information

Item Value
RNA id TCONS_00036827
length 1042
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_018051
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 22651976 ~ 22659422 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGTGAGATAAAAGGTGGAGTGACGACAGTGAAAGAGACAGGAGAAGGTCTGGGACGTTTGTGTGGACTTTTCTGCATATTTGCCCGGCAGTAGTCTGTAAGGAGCTGCAGATTTCTTTTAGTTTTGAGTTTATTGTTGACATTCGCCATTTCCCGCCTCCTTCCAGTTTGTTTGACTTCAGCTAACATCAtggcatgaggGTAATATCAACATTGTCTTTCATCACGGCACTCTGCTCTGGCTTTGGCGTGCATTTGTTTTTGAGGAGCCATGATTTTGGAAAGCTCTTAAGTTCCAGAACCACCTTTACTGCAATGGTAACGGCCGGGATGACCAATTCTTTCCTTCTGTGCATCACTTCCATTCACAGCAACCCCCTTACACACATGGGGACTTGCTGATAAGTGATTTTCACACACATTTGCTGGTTGCGGAGGTGATAACTGATGTAATGAGGGCAGGGAACACTTCCAGTCCCCTTCCCATCATCACAGAGCTGACATCCCTCAACTGACATCAAAAGATTCAGGCTCACATGTATGCAGACATGTGCTCCTGCACGTATCTCTCTCACCCACTCTGCCAAACATCCAGTCAGCCTGCAGAGTTATTACTAAACTGTGAAGAAGATAAAATTATTCTATTAGCCCGTGAACATTTATCCATGCTTTTTATAGTGTCTCTTGCTGCTCTAGGCAGCCATATAGTTGAATATGAATCATCCACTCTCAGGATCATAGTTAGGAGTCATTTCTAGCATCATtccatgatttatacatttttaatgcactttgaaattgtgtttttttttatgcataaaaAATAGGTTCTTTCATGTGGAGTACTAAAAATGCATTTTCTGTATTGATGGCCCAGGAAACATCTTGTAAAAATTTTGATGTGTGAATGttaaagtatatattttcttttcacaTGTGTTGAAAATGTTCTTCAAATATGCAGTATACGTGcaatattaatcatttattatataataatttctgTAATGATGTCTCTTGGTGCTGTAGGCAAtcctatac

Function

GO:

id name namespace
GO:1903371 regulation of endoplasmic reticulum tubular network organization biological_process
GO:0022402 cell cycle process biological_process
GO:1903373 positive regulation of endoplasmic reticulum tubular network organization biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0007017 microtubule-based process biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0098826 endoplasmic reticulum tubular network membrane cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036464 lncRNA downstream 219480 22389116 ~ 22432496 (-) False XLOC_018048
TCONS_00036465 lncRNA downstream 219481 22432112 ~ 22432495 (-) True XLOC_018048
TCONS_00036826 lncRNA downstream 581800 22043510 ~ 22070176 (-) False XLOC_018044
TCONS_00035568 lncRNA downstream 581882 22068160 ~ 22070094 (-) True XLOC_018044
TCONS_00035567 lncRNA downstream 636681 21999156 ~ 22015295 (-) True XLOC_018043
TCONS_00036467 lncRNA upstream 421849 23081271 ~ 23082858 (-) False XLOC_018056
TCONS_00036470 lncRNA upstream 421871 23081293 ~ 23083126 (-) False XLOC_018056
TCONS_00036829 lncRNA upstream 421871 23081293 ~ 23083255 (-) False XLOC_018056
TCONS_00036830 lncRNA upstream 421871 23081293 ~ 23083263 (-) False XLOC_018056
TCONS_00036832 lncRNA upstream 421871 23081293 ~ 23083278 (-) False XLOC_018056
TCONS_00035575 mRNA downstream 167355 22483048 ~ 22484621 (-) True XLOC_018050
TCONS_00035573 mRNA downstream 175721 22435180 ~ 22476255 (-) False XLOC_018049
TCONS_00035574 mRNA downstream 187726 22436376 ~ 22464250 (-) True XLOC_018049
TCONS_00035571 mRNA downstream 273575 22335511 ~ 22378401 (-) False XLOC_018047
TCONS_00035572 mRNA downstream 273575 22335931 ~ 22378401 (-) True XLOC_018047
TCONS_00035576 mRNA upstream 80370 22739792 ~ 22798794 (-) False XLOC_018052
TCONS_00035577 mRNA upstream 97134 22756556 ~ 22778394 (-) True XLOC_018052
TCONS_00035578 mRNA upstream 210186 22869608 ~ 23041275 (-) True XLOC_018053
TCONS_00035580 mRNA upstream 363563 23022985 ~ 23026223 (-) True XLOC_018055
TCONS_00035583 mRNA upstream 501090 23160512 ~ 23171430 (-) False XLOC_018059
TCONS_00035566 other downstream 741842 21897971 ~ 21910134 (-) True XLOC_018042
TCONS_00035565 other downstream 789072 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035557 other downstream 1319848 21332014 ~ 21332128 (-) True XLOC_018040
TCONS_00035544 other downstream 1830187 20817229 ~ 20821789 (-) False XLOC_018037
TCONS_00035579 other upstream 250776 22910198 ~ 22910312 (-) True XLOC_018054
TCONS_00035581 other upstream 422238 23081660 ~ 23081796 (-) True XLOC_018057
TCONS_00035582 other upstream 422647 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035586 other upstream 501857 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035590 other upstream 564478 23223900 ~ 23226376 (-) True XLOC_018061

Expression Profile

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