RNA id: TCONS_00035615


Basic Information

Item Value
RNA id TCONS_00035615
length 915
lncRNA type retained_intron
GC content 0.47
exon number 5
gene id XLOC_018073
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 24149794 ~ 24183382 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttttttttttttttttcttggatacACACTTATAGTCGTCTTTTGAAAGCAATATCGCATTCATTACGCCATGATAGGAGCTGTCCAATCAGTGAAGGCCAAGCTGCCTGTGTGATTCTGTAGGTGTGGTTTGCGGTTTTTGgtgtaaggtgtgtgtgtgtgttgctgggAAGGCCATGTGAGGGTTTATTCATGTAAAGGCCGCGTTGGAAGAGATGCTGTCACGCTAGAGTTGGACATTTAATCAGTGCAGCTGTCTGACTGTCACGTCCCTGTGGTGAGAGCTTATACACCAACCACTACGACTCATCAGATTCCTCTcttctttctttgtcatttctctCTCTTTTGCAGCAACCTGTGAGCCTCATAGACGCAGATCTGTGCAGGATCTTCCTGCCATTGGTACAGATGCCAGTCAGGATAGCAGAAACAACAGCAGATCGTCCAGTCCAAGCTTTAGGATGATTACACCAGACAGGACAGacACTAATGGCTCAGATAACTCTATCCCTATGGCCTACCTGACCCTGGACCATCAGTTACagCCTCTTGCCCCTTGTCCAAACTCCAAAGAGTCGATGGCAGTGTTTGAGCAGCACTGTAAAATGGCACAGGAATACCTGAAGGTGCAGACAGAGATCGCACTTCTCAAACAGAGAAAGGAAGAGCTGATAGCAGAACTAGACCAAGATGAAAAGGATCAACAGAACGCATGTCGCCTCGCTCAGGAGCAAAAGAAGCTCATAGAGGAGAACAAGAGTCTGTCCACCTACTACCAGCAATGCAAGAAACAACTGGAGCTGATCCGAGCGCAGCAGCAGAAGAGACAGGGCACCTCATGAACCCTCTAATCATTAAAAAGAGCCAGACTGACTCTATCCTAACCACAGCCCCGGTATCTCCACCTCCC

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0007254 JNK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04013 MAPK signaling pathway - fly
ko04310 Wnt signaling pathway
ko04064 NF-kappa B signaling pathway
ko04668 TNF signaling pathway
ko04152 AMPK signaling pathway
ko04140 Autophagy - animal
ko04214 Apoptosis - fly
ko04520 Adherens junction
ko04613 Neutrophil extracellular trap formation
ko04620 Toll-like receptor signaling pathway
ko04624 Toll and Imd signaling pathway
ko04621 NOD-like receptor signaling pathway
ko04622 RIG-I-like receptor signaling pathway
ko04660 T cell receptor signaling pathway
ko04657 IL-17 signaling pathway
ko04380 Osteoclast differentiation
ko05170 Human immunodeficiency virus 1 infection
ko05161 Hepatitis B
ko05171 Coronavirus disease - COVID-19
ko05162 Measles
ko05168 Herpes simplex virus 1 infection
ko05169 Epstein-Barr virus infection
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05145 Toxoplasmosis
ko05140 Leishmaniasis
ko05417 Lipid and atherosclerosis
ko05418 Fluid shear stress and atherosclerosis
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-041001-135 Predicted to enable MAP kinase kinase kinase activity. Acts upstream of or within blood vessel morphogenesis. Human ortholog(s) of this gene implicated in frontometaphyseal dysplasia 2 and prostate cancer. Orthologous to human MAP3K7 (mitogen-activated protein kinase kinase kinase 7).

Ensembl:

ensembl_id ENSDART00000153083

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035610 lncRNA downstream 29921 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00036836 lncRNA downstream 206580 23908594 ~ 23946098 (-) True XLOC_018071
TCONS_00035600 lncRNA downstream 664534 23480453 ~ 23488144 (-) False XLOC_018066
TCONS_00036473 lncRNA downstream 956020 23194788 ~ 23196658 (-) True XLOC_018060
TCONS_00036472 lncRNA downstream 981319 23169183 ~ 23171359 (-) True XLOC_018059
TCONS_00035617 lncRNA upstream 11904 24171668 ~ 24181988 (-) False XLOC_018073
TCONS_00036474 lncRNA upstream 28213 24187977 ~ 24188631 (-) True XLOC_018074
TCONS_00036837 lncRNA upstream 75162 24234926 ~ 24272463 (-) True XLOC_018075
TCONS_00036475 lncRNA upstream 288243 24448007 ~ 24450177 (-) False XLOC_018077
TCONS_00036838 lncRNA upstream 288243 24448007 ~ 24454929 (-) False XLOC_018077
TCONS_00035608 mRNA downstream 29797 23972948 ~ 24122881 (-) False XLOC_018072
TCONS_00035609 mRNA downstream 130120 23974626 ~ 24022558 (-) False XLOC_018072
TCONS_00035607 mRNA downstream 206382 23877299 ~ 23946296 (-) False XLOC_018071
TCONS_00035606 mRNA downstream 276387 23860858 ~ 23876291 (-) True XLOC_018070
TCONS_00035605 mRNA downstream 300504 23847380 ~ 23852174 (-) True XLOC_018069
TCONS_00035618 mRNA upstream 22034 24181798 ~ 24183382 (-) True XLOC_018073
TCONS_00035619 mRNA upstream 275907 24435671 ~ 24443680 (-) True XLOC_018076
TCONS_00035621 mRNA upstream 657354 24817118 ~ 24963092 (-) False XLOC_018079
TCONS_00035622 mRNA upstream 658072 24817836 ~ 24963038 (-) True XLOC_018079
TCONS_00035623 mRNA upstream 1199300 25359064 ~ 25436389 (-) False XLOC_018081
TCONS_00035611 other downstream 29921 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035595 other downstream 727024 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 904039 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 926302 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035586 other downstream 989421 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035626 other upstream 1208746 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 1377816 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 1378591 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035639 other upstream 1389661 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035648 other upstream 1482916 25642680 ~ 25644837 (-) True XLOC_018090

Expression Profile

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