RNA id: TCONS_00035742


Basic Information

Item Value
RNA id TCONS_00035742
length 6397
RNA type mRNA
GC content 0.40
exon number 14
gene id XLOC_018134
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28418484 ~ 28434078 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTAATTTCACACAGTCTCATGGTTTGACCAATGAACAAAAAGGGGGCGGGAATTTCTGGTGTCGTGAGGAAGTAATATTTTCTAAACAGGAAGAGGTCACCACGACTGGCATCTCTTTCTGCAGATACACTGGCATGGCTGCTGACAAGCAGAAATGAAGCGTGGAAACTGGCGAGCACGGGGCCGCGACCGTCACCGACAGCAAAACCAGTCCCAGTGGCGGAGGAGACCCCGGTCAGACCACGACGAGCAGGAATACGGgtctGACAGGACAGCAAGTGATGCAGGTTCGTCCTCTGCATCCTCATCAGCACCCTCGTCTGCACCAGAGTTGCCTGGCTTCTACTTCGACCCAGAGAAAAACCGCTACTTCCGTTTGTTGCCTGGACACAACAACTGTAACCCATTGACAAAAGAGGGGCTCCAGAAAAAGGAAGAGGAGAAAAAGAGATCAGCACTGCTAGCAGAGGATGATGGTCCTAAGAAGaaatctccCAGGACTGGGCTGAACTCTGCATTGCTGTTACAGAAGAGACATCTGGGTCTGCTGCCCCCAAGCTCCTATTCAAGGCTGATCCATGAATTGAAAGTCAGCGGGATGCAACGTCACAGACTGGAGGTGCAGAGCTCCAATTCCACCAGTCCAAACACTGACAACTTCCATCTCATTGTTGCAGATTCAGCCTGTGAGCGGGTTTTTACAGTGAACGATGTGTCACATGGAGGATGCAAGTACGGCATTATGAATTTCCATGGTTGTAGAAAAGGCTCTCTGTCGGTGGAGATGTGCGATAACCTTTATTTCACAAACCGCAAGgtgAACTCTGTATGCTGGGCCTCTGTGACACATACAGACTCGCATGTTCTATTGTGTTTGGTCGGCATTTCTCAGACGCCTGGCTGTGTAAGCTTATTACCTGCTTCTCTTTTCAGCAACTTCAATCCCGATCAGCCAGGTATGCTGTGTAGTTTTAAGATCTCCACAGCTTGGTCATGTGCATGGTGCCTCAACCCACAGGCCGATAAAACATTCAGCAccgGTCTTTCTCGAAGAGTGATTGTGACTGATGCCGTGACTGGACGCAGAGCCACATACCTTGCTGACAGTGATGTTCTGGCTCAACAGTTTGCCTTGAGGGCTCCGGTGCTGTTCAACGGCTGTCGTTCAGGAGAGATCTTTAGCATTGACCTGCGTCAGCGAGACAGAGGCCGCAGTCACGGGTGGAAGACCAGCCGCTTCTACCAGGAGTCGGCTATCACCTCTGTCCAGCTGCTGCAAGATGAGAACTACCTGCTCGCCGCAGACATGCTGGGCAAGATAAAGCTGTGGGATATTCGTGTTAAGCGTTGTGTCAAACAATATGAAGGGCACCACAATGAATATGCCTACCTCCCCATTCACATCAATGAGCCTGAAGGATTGCTGCTTGCTGTGGGTCAGGACTGTTACACAAGGCTTTGGAGTCTTCAGGACAGTCGTCTCCTCAGGACGATCCCTTCACCTCACCCTGCAGGAAAGGACTCAATCCCGAATGTGGTGTTTTCCCCCCAGCTGGGTGGCAGTAGAGGACTTCCTGGACTCCTTATGGCCGTTCGCCATGATCTCTACTACTACTCTTACAACAAAGACTATCAGGATGGTTTTACACAGGAGGGTCAGTGCTAAAAATTCTCCTCTGAAAGCCAGTATCAGACCGTGCCATGTGAAAGAAATCACATCTGTTGCCAATAGCTACTGTCTTACTTAGATGCCATTTGTAACATCTGCCTTTCTTTTCAAAGAgatggttcaccccaaaaataaaaatagtgaaaATCAATGGTTTACTCACTCTCCACCTGATCCGAACCaaatttgagtttctgttgaacacaaaggaagacctAAAGAATGTTGTGGGGgggcattgacttccatagtattgtttTTATTCTTAAAGGCTTTTTCCAACATGTTtttagaatatcttgttttgtgttcaacaaaagaaagaaattcataaaagtttagaaccacttgagtgtgaggaaatatttgtttttgggtgaactgtccctttatatAAAATTGTAGATTAGACTGTAGGGAATTTAAAATACTTGCTTTGTTCTTATATTGTCaatagaaattataaaaaaaaacatacacctAATTCTAGCCACTTGAAATATACCTCCTGAAAGTGCAATTTCATGATGTttatggttgttgttttttttttgtttttttttgaacGAAAAATAATTTTACTTGAAATATGCTTGGACATTTTGTAAATCAAGAAGGGAAACTGTTTATCatcattcaaaataaatagaagcTTTGTCTATCTGTATTTTTTAGTTTAAATCTCAACATGAATTTTAAGGAAAAGTttatgcaaaaaatgttttttaattaccCATTTAAGAACAGCTGAACTTTTAGTCTTATCATCTCtaaactacactcaccggccactttattaggtacaccttactagtacccccttttgctttcagaactgctttaatccttcatggcatagattcagaaAGGTACTTGAAATATTTCTCAGTTTGGTCCAtgatgacatgatagcatcacgctgatgctgcagatttgtcagctgcacatcaatATCtcccaatctcccattccaccacatgccaTAGGTGCCCAATTGGAttgaggatctggtgactgtggaggccatttgagtacagcaaactcattgtcatgttcaagaaaccagtctgagatgattcgtgctttgacatggcgcgttatcctgctggaagtagccatcagaagatgggtacaccgtGGCCATAAAGGAATGGatatggtcagcaataatactcaggtaggctgtggtgttgacacaatacTCAGGGTCAATACTCAGTacttggtactaatgagcccaaagtgtgccaagaaaatatcccccacaccattacaccaccaccagcagcctcaacagtttatacaaggcaggatggatccatgctttcatgatcttgacaccaaattctgaccctaccattcaaatgacgcagcagaaatcgagactcatcagaccaggcaacatttttccaattttctattgtcaaATTTTAGTGAGCctctgtgaattgtagcctcagtttcctgttcttagctgacaggagtggctccCGGTTtggtctgctgctgtagcccatccgcctcagcatttagagatgctcttctgcatactttggttgtaattcaattcaattcagctttatttgtatagcgcttttacaatgtagattgtgtcaaagcagcttcacataaatggtcatagtaactggaacagtgtggttcaggttttagtgtttaagttcagttcagtttagctcagttcagtgtgatttaatcattactgagagttcaaacactgaagagcaaattcatcgatgcgtgttaatttaagttactgttgcctttctatcagctgaaaccagtctggccattctgctctgacctcaacaaggcatttgcgcccacagaactgccgttcactggatatttttttctttttcggaccAATCTCTGTAAACCGttaagatggttgtgtgtgaaaatcccagtagatgagcagtttctgaaatactcagaccagcccttctggcaccaacaaccatgccaccatTCATGGCCAGTGTACATGTCAACAGTTACTGACACTTTTTATGTAAAACAAATAGTAACACATACAGGCGAATCAAAATGACCCATGGCTCCAGATGATACACAGGTCTTGTAAAGCAAAACATTCATTCTGTGCAAGAAAcattacatttataacatttattacCTTTATTCCTCAGTCTTGGTAAACAATTCTGAGTGTGTTCATGAAGTGTGCGTAGCTAATATCACTCATTGTGTACATGTaagttcagtttcttgcacagatcaaacatttttgctttataaGACCTCAGTGTATCGCAAAGAGCCATGAGTAATTTTGTTTTGCTCgtttaaggttttatttattcTCAAAGTGACCATAACTATTgaattgcattttatgaatcattcatttttttgggaACTAATCCTTTTTTTCATTATATGGAATGaatatgacaaaatattattttgtaaaagaAAGATATCATACAGGTTTGAAGCAGCATGAAGGCGAGTAAATGATCAGGTTTTCATTtgcaaatacaaatatgcattcATCAATGTTTACATGTAAGCCACACTCTTAGAGGTACTCAGATTTCATTTAATTAGCATACAAGGTGCAAAGAACATAAAATGATATTCATGTTTCTTATGTCTGTGTCAGTCATGTCCAGTCATTCACGCATAATGCCTCTACATAACCTGATTCTACATGATGAAGGGTCATTTGGCCAGGAAAACAATTATAGACTTATCATAAAACAAACCAGGGGCTAAATAAGAGCAATTATCGTATGATATCATGAGCTTTATGTGGATTGGCATCTTGACAGAAAATGCAGAGCCACATTATTTGTGCGGTTTATCATGGCTTTGTGTTGAGAGTCACTTAGTTTGATTCAGTACCATTGGTAGTGATTCATAAAAAAAGGTCAGTTTTAAGTACTTCAAATGTAAACATCCTGCTCAAGtacttgcatttaaaaaataattgataaaGGTCTTTCAATTATGCTACAGAACATTTGATAGTTTTGATGTTTACGTCAGATTCATAATAGGCTGCAAATAATAGaggcaaacaaaaataaagctaaaatctACACTAAGGTTCCTTGAGAAGAAAGGAATGGAAAAACCATAAGGataatcttgttttattttattttttttacatttttaaagcaaatttgtGAAATCTTTTGTAAAACTAAAATTGAGTAACGTAACAGTTCGGTAAACAATATTACTAATTTTTGTGCACCGGTCTAGTGTATCCTGTAGAGGCTGTGTGTTAGCTGCCTTTACCAACAGGAAGGCCCACATGTATCTTCAATCAGAATTCCACAATTTGCACCTAAGCTCATTTTCTAGCATGTTTAGACCAGAGTcagaaattaaatatttcatttaaggCTTTTTTAGTGTTAGTGttaataaagtaatatataaaACTGATCTTTGTTGTCTCAAGTCAAATACTTACATATAAATAATCACTGAACTGCTGTATTAACAATAagctttatacatttaaaattatgcaTAAAAAGGGAGACAAACAATACGGAGTATGGCTGCAATCTCATGACAAATTATTGATTACTGCTCTTGGCATTCTAATAAtgtttactatttattaatatataaataaatcattttacatATTACAGGCAAACATGTCGGTCCATGACATTAGTCTAGCACAAGTTATAATTAACGAAACTGctaaataaatcttaattaaTTACCATTAAATAAATCAGACACAAAATGTAAGAAATcatggatacatttttttttctgttttaagtaaaaaataatgaCACTAATTAATATATTATAGGTACGATTTACTAAAACATGGAAACTAATTCATACATGGtggccaaaataaataaaaatgtgggaAGGAATCAGTAAATCGTTGCTATACATTACGAAACTAATTGTGGAAAATCTGAATCCAagtctacaatatatatatatatatatatatatatattatccaaTGTAACATACACTTTTCAATAaccttaaggttttttttttttttaccgcaacacattaatttaattgtaaagGGGCATTTTTACCTCATTATCTTGAATTTGTGGAGCATTTTTACCACAAGCAGCCTGCTAATTTCTGACCCTGATTTAAAcccattgattttgttccatctGGGCCTGCCCATGGGTAGCATATTGCATGGTGAACGGAAGATTGTCATGGGTTTGACATTTAGTTTCCTGATagatttaccttttaaaaaaaataaaataaaaaataaaatacagaggcCATCATTGTTAAACAACTTATGTAGAGTCCAGGAACATGACATGAATGAAGTGTTGGGACAAAAAGCAGAGATGTTCCTTCCTTGTTTTCTGATAACCAAGAGGATTTCATTGGTTTGGGAGCAGTGCCTCCATCATCACAAACTGTACTGAAGCGCTGTGGCCACAGACAAGGGTGTCTTATAATGTGGAGTGACTTCTGTTTCTGCTAGAGCTCTCCAGATTTCTGGTTGCAGGTGGTACACACCCGCACAGGATGGTCCCAACCCCTGGAGGGCACGGCCCGTCGATCTGGGGAGCAGTCGTTACATACTCCTTGTCCGCATGCACGGCAGTGATGGATGGAGAGACGGGCGTTAAACTCACGCTGGCACTGGTTACAACATCGGATGTCTTGATCAGGGACCCAATACGCTGGACGAGCGGCATCTTTAACCAGACCTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040109-2 Orthologous to human DCAF4 (DDB1 and CUL4 associated factor 4); DCAF4L1 (DDB1 and CUL4 associated factor 4 like 1); and DCAF4L2 (DDB1 and CUL4 associated factor 4 like 2).

Ensembl:

ensembl_id ENSDART00000193381

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035738 lncRNA downstream 123380 28284780 ~ 28295104 (-) True XLOC_018131
TCONS_00036853 lncRNA downstream 149243 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00036852 lncRNA downstream 184892 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036851 lncRNA downstream 254332 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036850 lncRNA downstream 254357 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036477 lncRNA upstream 204682 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035758 lncRNA upstream 401291 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036854 lncRNA upstream 426364 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00036478 lncRNA upstream 992860 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00035778 lncRNA upstream 1039509 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00035740 mRNA downstream 14041 28399593 ~ 28404443 (-) False XLOC_018133
TCONS_00035741 mRNA downstream 14122 28401539 ~ 28404362 (-) True XLOC_018133
TCONS_00035739 mRNA downstream 56910 28354269 ~ 28361574 (-) True XLOC_018132
TCONS_00035737 mRNA downstream 66132 28269603 ~ 28352352 (-) False XLOC_018131
TCONS_00035736 mRNA downstream 69340 28266327 ~ 28349144 (-) False XLOC_018131
TCONS_00035745 mRNA upstream 77863 28511941 ~ 28638871 (-) False XLOC_018135
TCONS_00035746 mRNA upstream 77864 28511942 ~ 28642061 (-) False XLOC_018135
TCONS_00035748 mRNA upstream 215947 28650025 ~ 28768109 (-) False XLOC_018137
TCONS_00035749 mRNA upstream 218468 28652546 ~ 28698172 (-) False XLOC_018137
TCONS_00035750 mRNA upstream 218521 28652599 ~ 28768114 (-) True XLOC_018137
TCONS_00035726 other downstream 1106869 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 1192606 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 1364264 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 1829574 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 1867251 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035747 other upstream 177194 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 398684 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 437807 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 613105 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 1061222 29495300 ~ 29495435 (-) True XLOC_018151

Expression Profile

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