RNA id: TCONS_00035801


Basic Information

Item Value
RNA id TCONS_00035801
length 893
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_018157
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29784927 ~ 29787210 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATTAACCGCAACATCGGCACATCCACCATGAAGGCAGTCAGTCCGGTGAGGTCCGTCAGGAAACCTGCCTTGTGTTTTTCGGAGCATAATATGGGCATCTCGCGGAGCAACGACCCGCTCAGTCTACTGTACAACATGAATGACTGCTACAGCCGGTTGAAGGAGCTCGTGCCGAGTTTACCGCAGAACCGGAGCGTGAGTAAGATGGAGATCTTGCAGCATGTTATAGACTACATTTTGGACCTTCAGATCGCACTGGACCAGAACCcgctacagcagcagcagcagcagagccTCGGACAGAGCCCTCCAAAAAAGACTGTCAGATCACTGGGAGCTGATATCAGCATCATCTCTTTCCAGCCCAGTAACCCTCAAAGAGAGATCAACACAGATGACCTCATAGCCCTGTCTCGTTGAAATGGTGTTTCGGTCGTGGAGCAAAAACAGaggctttttgtgttttttttttgtcccgtGTCATTCTCCTGGACTTCGTCTTGAATGACAAAGGATTTTCCTCAAACGGACAAAAAAAAGATTCTGACTTAGTTGTATATGGACTTTCCTATTTTTTCTTCCAAAGGAAGATTAAAAGAGACTGAAGGAAAATACTAATTACGCAAGCAATCCTAGAAAgatgtttttgttcttttgtgttgtaaagaaattgAGCAAAAACgctctattgttttctctttctgCTGAAAATGTGATGTTTataatattacagaaatttttataattataacgTAAATGGCActtttatactgtacataattAAATGCGAAGTATGAAGCCAGTGTCTTTGTCTGAACAACTGTTACAGATGCaatgttttttgttgtatttttttgtttttgcatatacATAAAGCTTATTAACTTATTA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-15 Predicted to enable DNA binding activity and protein dimerization activity. Predicted to be involved in cell differentiation; circadian regulation of gene expression; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; liver; nervous system; notochord; and pronephric duct. Orthologous to human ID2 (inhibitor of DNA binding 2).

Ensembl:

ensembl_id ENSDART00000125348

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035800 lncRNA downstream 93462 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00036855 lncRNA downstream 95519 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035795 lncRNA downstream 158439 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA downstream 158943 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00035793 lncRNA downstream 255096 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00036856 lncRNA upstream 2750 29789942 ~ 29834538 (-) True XLOC_018158
TCONS_00036857 lncRNA upstream 139993 29927185 ~ 29933758 (-) True XLOC_018160
TCONS_00036479 lncRNA upstream 246366 30033558 ~ 30035310 (-) True XLOC_018161
TCONS_00036480 lncRNA upstream 305067 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00036858 lncRNA upstream 336298 30123490 ~ 30257999 (-) False XLOC_018163
TCONS_00035798 mRNA downstream 101144 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035797 mRNA downstream 101144 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035799 mRNA downstream 101173 29678458 ~ 29683754 (-) True XLOC_018155
TCONS_00035794 mRNA downstream 151420 29619820 ~ 29633507 (-) False XLOC_018154
TCONS_00035791 mRNA downstream 251917 29513470 ~ 29533010 (-) False XLOC_018153
TCONS_00035803 mRNA upstream 49084 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA upstream 49086 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035805 mRNA upstream 245436 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035806 mRNA upstream 568244 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA upstream 573961 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035788 other downstream 289492 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 734882 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 909053 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 942356 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1172605 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 585471 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 586015 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 586673 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 587494 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 1257883 31045075 ~ 31045205 (-) True XLOC_018178

Expression Profile

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