RNA id: TCONS_00036856


Basic Information

Item Value
RNA id TCONS_00036856
length 843
lncRNA type inter_gene
GC content 0.44
exon number 7
gene id XLOC_018158
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29789942 ~ 29834538 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACTTTGatgcatgtttttaaaaatgtattaagGTAGCCTAATTTGCATACTGCAGCGTCGGTGATTAGTTACTGAAGTTCTCGGCTGTTTACATCAGTTTCTGGACAAAATTGCCGTTTCCTGTAAATTATGCATACTACAGAGGGAGCCGCTTCTTTAGCCATGAAGAACTGAACCTGAGGGAGAGCAACTTCATGTTAAAGATGTATATGTAAATTGGACTCTTGCTTTTTCTTGGATCTCACCATAAGCTTTCTGTTGTGGCCAGAATTGGATTCAAGATCTTGTTTTTGGCCAAATAAGTGGCATCTACAAGCCATCTACCAACCATACACCCCATCTGGGCTATCCACTAATTCTGAAAGTGTTTCCCTGTGACACTTTAATGGATCTGGACCGTTATGTGACCTGACGGCACTGGTGCTTTGGAAAGTCCATTACTCTTCTCTGAAATACAGAGCCGGATTGCCTCTTCTGCTCGGGATGAATCTGCTGATGGCAGCACTTGATGTGCCAGGAGCAGATAAGAGCCACATGCACACTGAAACGTGCCGCTCTTCGACATCCAGCATGGCTGTGCAAACTCTCAGGAATGTGAGAGACAGTCTATGATGATAAGCAGACAGCGGACGAGAGATTACCAGCTCTGAAGGAGGAAAAAAGACTTCTAGCAAACAGAGAAGTGAGAAGGGGTGACCCAAGGACTCAACTAGACAACTGCTGATCCAGCTTTATCAGGATTGCGTCTCTAAGCATTGCACTTGACCTGCAAATAGTGTGCTATCAATTACCTGGGATGAAAAGGTGTCTGCGTAAAGCTTAAGCTGAGTAAACAAAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035800 lncRNA downstream 98477 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00036855 lncRNA downstream 100534 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035795 lncRNA downstream 163454 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA downstream 163958 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00035793 lncRNA downstream 260111 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00036857 lncRNA upstream 92647 29927185 ~ 29933758 (-) True XLOC_018160
TCONS_00036479 lncRNA upstream 199020 30033558 ~ 30035310 (-) True XLOC_018161
TCONS_00036480 lncRNA upstream 257721 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00036858 lncRNA upstream 288952 30123490 ~ 30257999 (-) False XLOC_018163
TCONS_00036481 lncRNA upstream 288963 30123501 ~ 30187184 (-) False XLOC_018163
TCONS_00035802 mRNA downstream 2732 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035801 mRNA downstream 2750 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035798 mRNA downstream 106159 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035797 mRNA downstream 106159 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035799 mRNA downstream 106188 29678458 ~ 29683754 (-) True XLOC_018155
TCONS_00035803 mRNA upstream 1738 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA upstream 1740 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035805 mRNA upstream 198090 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035806 mRNA upstream 520898 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA upstream 526615 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035788 other downstream 294507 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 739897 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 914068 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 947371 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1177620 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 538125 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 538669 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 539327 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 540148 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 1210537 31045075 ~ 31045205 (-) True XLOC_018178