RNA id: TCONS_00036859


Basic Information

Item Value
RNA id TCONS_00036859
length 869
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_018163
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30123490 ~ 30258573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGGCCAAAAAAACCTCCAAGAACCACAGCTGTAGAATATCTAAAGAGAAGCCCAAAGGAGAGCGCGGAGTGAACAGACATACTGAAATAACTTTGGATCAGATTTCCTCGCCTCCACGATCTCTGAAGGATAGAAGTGATTCCGGTCAGAAAGATGGCTATCGGAGATGTATCTCCATTAGTTGTAGAGCAGGCTCTGGGATAGCTAAGCGTCTCTTTGGCAGAGCTCAGAGTTGGCACTCAGACAGCACCAGACAGCCAAGAGGGGATTGTGCCACTGCCATGCCAACCGCCTCTGCCAACTGAGCCTTCTCGCTGCCAGGCTCCTGTCACACAACAGATACGTACGGCCTGCTCAGCCTCGCTCCGCACAGGCAGGCCAGAGACCAACACTGCCAGGGCTAATTGAGGGCAGGGTCTCCCAGCTGCCACACGTAGATAGAATTGTGTACTAAACCTAGAAAAATCTGAGAAACATAAGCTTTCACGTGGGCTTTGTGAtttgcattcacacacttatGGTGTCATTTGTACCTGTACGCAAAACAGCTGCTAGTTGAGCGTTACAGACAGGTTCGTAGAACCTGGTATtacatattacagttaaatagcAATCTTGGACAACACCCACTTTTTATTATCAGCACATATCTCATTTTACATACATGTTTAGTGGCATGTTTCATATGTAAATTTACTCGATTCATCACTGAGCCTTGCTTTAACGTTATGGATCAATTCTTCCTTGGTAAATGTTGCCATCAGTTATTTTTTTGTCAGAAATGTATGTGCAGCAGATGAAATGCAGATTCAGTTTGAGTCATGCATTGTGTTGACAAAAggtactaaatatatatttttatgcctc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036480 lncRNA downstream 47155 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00036479 lncRNA downstream 110864 30033558 ~ 30035310 (-) True XLOC_018161
TCONS_00036857 lncRNA downstream 212416 29927185 ~ 29933758 (-) True XLOC_018160
TCONS_00036856 lncRNA downstream 311636 29789942 ~ 29834538 (-) True XLOC_018158
TCONS_00035800 lncRNA downstream 454709 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00036862 lncRNA upstream 4234 30205348 ~ 30238050 (-) False XLOC_018163
TCONS_00036863 lncRNA upstream 4234 30205348 ~ 30238604 (-) False XLOC_018163
TCONS_00036864 lncRNA upstream 4234 30205348 ~ 30257999 (-) False XLOC_018163
TCONS_00036865 lncRNA upstream 11662 30212776 ~ 30257999 (-) False XLOC_018163
TCONS_00036483 lncRNA upstream 52570 30253684 ~ 30257974 (-) True XLOC_018163
TCONS_00035805 mRNA downstream 110848 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035803 mRNA downstream 281644 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA downstream 281784 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035802 mRNA downstream 358964 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035801 mRNA downstream 358982 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035806 mRNA upstream 154322 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA upstream 160039 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035809 mRNA upstream 171238 30372352 ~ 30377221 (-) False XLOC_018165
TCONS_00035810 mRNA upstream 171239 30372353 ~ 30376433 (-) True XLOC_018165
TCONS_00035815 mRNA upstream 692979 30894093 ~ 30901034 (-) False XLOC_018172
TCONS_00035788 other downstream 650739 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 1096129 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 1270300 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 1303603 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1533852 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 171549 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 172093 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 172751 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 173572 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 843961 31045075 ~ 31045205 (-) True XLOC_018178

Expression Profile

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