Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035808 |
| length | 920 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_018164 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 30355436 ~ 30370927 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006144 | purine nucleobase metabolic process | biological_process |
| GO:0000256 | allantoin catabolic process | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004037 | allantoicase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040718-471 | Predicted to enable allantoicase activity. Predicted to be involved in allantoin catabolic process. Predicted to act upstream of or within purine nucleobase metabolic process. Orthologous to human ALLC (allantoicase). |
| ensembl_id | ENSDART00000145992 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036861 | lncRNA | downstream | 108581 | 30146174 ~ 30258573 (-) | False | XLOC_018163 |
| TCONS_00036482 | lncRNA | downstream | 108662 | 30146174 ~ 30258492 (-) | False | XLOC_018163 |
| TCONS_00036858 | lncRNA | downstream | 109155 | 30123490 ~ 30257999 (-) | False | XLOC_018163 |
| TCONS_00036860 | lncRNA | downstream | 109155 | 30146174 ~ 30257999 (-) | False | XLOC_018163 |
| TCONS_00036864 | lncRNA | downstream | 109155 | 30205348 ~ 30257999 (-) | False | XLOC_018163 |
| TCONS_00036866 | lncRNA | upstream | 94575 | 30465502 ~ 30466038 (-) | True | XLOC_018170 |
| TCONS_00036867 | lncRNA | upstream | 429941 | 30800868 ~ 30806474 (-) | True | XLOC_018171 |
| TCONS_00036868 | lncRNA | upstream | 531630 | 30902557 ~ 30911614 (-) | True | XLOC_018173 |
| TCONS_00036869 | lncRNA | upstream | 594956 | 30965883 ~ 30970932 (-) | False | XLOC_018176 |
| TCONS_00036870 | lncRNA | upstream | 594956 | 30965883 ~ 30970967 (-) | False | XLOC_018176 |
| TCONS_00035805 | mRNA | downstream | 331828 | 30032628 ~ 30035326 (-) | False | XLOC_018161 |
| TCONS_00035803 | mRNA | downstream | 502624 | 29836276 ~ 29864530 (-) | False | XLOC_018159 |
| TCONS_00035804 | mRNA | downstream | 502764 | 29836278 ~ 29864390 (-) | True | XLOC_018159 |
| TCONS_00035802 | mRNA | downstream | 579944 | 29784930 ~ 29787210 (-) | True | XLOC_018157 |
| TCONS_00035801 | mRNA | downstream | 579962 | 29784927 ~ 29787192 (-) | False | XLOC_018157 |
| TCONS_00035809 | mRNA | upstream | 1425 | 30372352 ~ 30377221 (-) | False | XLOC_018165 |
| TCONS_00035810 | mRNA | upstream | 1426 | 30372353 ~ 30376433 (-) | True | XLOC_018165 |
| TCONS_00035815 | mRNA | upstream | 523166 | 30894093 ~ 30901034 (-) | False | XLOC_018172 |
| TCONS_00035816 | mRNA | upstream | 523897 | 30894824 ~ 30900947 (-) | True | XLOC_018172 |
| TCONS_00035817 | mRNA | upstream | 531211 | 30902138 ~ 30920356 (-) | False | XLOC_018173 |
| TCONS_00035788 | other | downstream | 871719 | 29495300 ~ 29495435 (-) | True | XLOC_018151 |
| TCONS_00035770 | other | downstream | 1317109 | 29047183 ~ 29050045 (-) | True | XLOC_018144 |
| TCONS_00035760 | other | downstream | 1491280 | 28871885 ~ 28875874 (-) | False | XLOC_018141 |
| TCONS_00035753 | other | downstream | 1524583 | 28832762 ~ 28842571 (-) | False | XLOC_018139 |
| TCONS_00035747 | other | downstream | 1754832 | 28611272 ~ 28612322 (-) | True | XLOC_018136 |
| TCONS_00035811 | other | upstream | 1736 | 30372663 ~ 30372883 (-) | True | XLOC_018166 |
| TCONS_00035812 | other | upstream | 2280 | 30373207 ~ 30373427 (-) | True | XLOC_018167 |
| TCONS_00035813 | other | upstream | 2938 | 30373865 ~ 30374084 (-) | True | XLOC_018168 |
| TCONS_00035814 | other | upstream | 3759 | 30374686 ~ 30374906 (-) | True | XLOC_018169 |
| TCONS_00035824 | other | upstream | 674148 | 31045075 ~ 31045205 (-) | True | XLOC_018178 |
