RNA id: TCONS_00035810


Basic Information

Item Value
RNA id TCONS_00035810
length 629
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_018165
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30372352 ~ 30377221 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaCACAGGCCATGTTCAGTACCAGCGCGAAAATAGTGAAGCCGAATGGCGAAAAGCCAGATGAGTTTGAGTCTGGCATTTCCCAGgcTCTTCTTGAGCTGGAGATGAACTCTGATTTGAAGGCTCAGCTGAGGGAGCTCCACATCACTGCTGCTAAGGAAATCGAGGTTGGTGGTAGCAGGAAAGCCATCATCATCTTTGTGCCTGTGCCCCAGCTGAAATCTTTCCAGAAGATCCAGGTGAGGCTTGTGCGTGAGCTGGAGAAGAAATTCAGTGGCAAGCACGTGGTGTTCATTGCACAGAGAAGAATCCTGCCTAAACCCACAAGGAAAAGCCGCACAAAAAACAAGCAGAAGCGTCCCAGGAGCCGAACTCTGACTAATGTGCATGACGCTATCCTTGAGGACCTGGTCTTTCCCAGCGAGATTGTTGGTAAAAGGATTCGCGTGAAACTGGACAGCAGCAGGCTCATCAAGGTCCACCTTGACAAGGCACAGCAAAACAACGTTGAACACAAAGTTGAGACATTCGCTGGTGTCTACAAGAAGCTCACAGGAAAGGATGTGATATTTGAATTCCCAGAGTTTCAACTGTAAAGTGCAGATgacaaaataaatttgtttacTGTC

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-1718 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development; hemopoiesis; and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Orthologous to human RPS7 (ribosomal protein S7).

Ensembl:

ensembl_id ENSDART00000190737

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035808 lncRNA downstream 1426 30367154 ~ 30370927 (-) True XLOC_018164
TCONS_00036864 lncRNA downstream 114354 30205348 ~ 30257999 (-) False XLOC_018163
TCONS_00036865 lncRNA downstream 114354 30212776 ~ 30257999 (-) False XLOC_018163
TCONS_00036483 lncRNA downstream 114379 30253684 ~ 30257974 (-) True XLOC_018163
TCONS_00036863 lncRNA downstream 133749 30205348 ~ 30238604 (-) False XLOC_018163
TCONS_00036866 lncRNA upstream 89069 30465502 ~ 30466038 (-) True XLOC_018170
TCONS_00036867 lncRNA upstream 424435 30800868 ~ 30806474 (-) True XLOC_018171
TCONS_00036868 lncRNA upstream 526124 30902557 ~ 30911614 (-) True XLOC_018173
TCONS_00036869 lncRNA upstream 589450 30965883 ~ 30970932 (-) False XLOC_018176
TCONS_00036870 lncRNA upstream 589450 30965883 ~ 30970967 (-) False XLOC_018176
TCONS_00035806 mRNA downstream 1469 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA downstream 2755 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035805 mRNA downstream 337027 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035803 mRNA downstream 507823 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA downstream 507963 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035815 mRNA upstream 517660 30894093 ~ 30901034 (-) False XLOC_018172
TCONS_00035816 mRNA upstream 518391 30894824 ~ 30900947 (-) True XLOC_018172
TCONS_00035817 mRNA upstream 525705 30902138 ~ 30920356 (-) False XLOC_018173
TCONS_00035818 mRNA upstream 546162 30922595 ~ 30931139 (-) False XLOC_018174
TCONS_00035819 mRNA upstream 549779 30926212 ~ 30931146 (-) True XLOC_018174
TCONS_00035788 other downstream 876918 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 1322308 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 1496479 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 1529782 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1760031 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035824 other upstream 668642 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035840 other upstream 1633577 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035855 other upstream 2083842 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035856 other upstream 2273410 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035866 other upstream 3094788 33471221 ~ 33475485 (-) True XLOC_018202

Expression Profile

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