RNA id: XM_021614685.2


Basic Information

Item Value
RNA id XM_021614685.2
length 2546
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110531481
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12552125 ~ 12562614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACCTTCATGTAAATAAtttacattatttttatttcatagGTTTAATTTTCAACAAATCGCCAACAATGCAGGTCCTTCTGTTAGCCACCGTTCTCTTCTGCGTGGAGGACTTCGTCCGTGCTGAGCCCAAACAGAAGTGCACCGAGCGCTGCGACGTGAGCacttgccccagccccagctgcCCGATGGGGTACGTTCCAGACCGATGCAACTGCTGCCTGGTATGCGCCCAGGGCGAAGGCGAACCATGCGGGCGCAAAGACGACCTTCCCTGCGGTGATGGACTCGACTGCAAGCACCCGGCCGGCAAGCGGCTCGCCAAGGGGTTCTGCCAGTGCAAATTAGTGCATAAAGTCTGCGGCAGTGATGGCAATACATATGGGAACGTGTGTCAGCTTAAGGCGCAGAGTAGGAAGGCTCTGCAACAGGGTCTGCCAGCCATCAACTCGGTCCAGAAGGGACCATGCAAAATCAACCAAAACAAAGTATAGGTACTTCACACCCCACCAGTCCCAGGTATAAGTTTAACTTCATAGCTGACGTGGTGGAGAAGATCGCTCCGGCTGTGGTCCACATCGAACTCTTCCTCAGACACCCTCTGTTCGGCCGGAACGTCCCTCTGTCTAGCGGGTCAGGCTTTGTGATGTCAGAGACGGGCCTGATAGTGACCAATGCCCACGTCGTGTCCAGCACCACGCCTATGTCAGGTCATCAGCAGCTCAAGGTTCAGATGCACAGTGGTGACATCTACGAGGCGACCATCAAGGACATCGACAAGAAGTCCGACATCGCCACCATAAAAGTCAACTCACTGAAAAAGCTCTCTGTGCTGTTGCTAGGCCACTCGGCCGACCTTCGACCCGGTGAGTTTGTGGTTGCGATCGGCAGCCCCTTTGCGCTCCAGAACACGGTTACCACGGGGATCGTGAGCACGGCCCAGAGGGACGGCAAAGAGCTGGGCATCAGAGACTCTGACATGGGCTATGTACAGACGGACGCCATCATTAACTATGGAAATTCAGGTGGACCTCTCGTTAACTTGGATGGAGAGGTGATCGGCATCAACACTCTCAAGGTGGCTGCTGGGATTTCCTTCGCCATCCCCTCTGATAGGATCACACGCTTCCTCAACGAATCAATGGACAAGCAGAGCAAAGaagtGAGATCACTGAAGAAGCGGTTTATTGGAATAAGGATGCTCACCATCACCTCAGCCCTGGTTGAGGAGCTGAAGCAGCAGAACCCAGACTTCCCAGAGGTCACTAGTGGGATCTACGTTCATGAAGTGGTTCCTCACTCTCCTGCACAGAAAGGTGGAATCAGAGACGGCGACATCATCGTGAAGCTGAACGGCCGTCCGCTGCTGACCACTGCTGACCTACAGGGGGCGCTCACAGAGGAGACGACTCTGCTGTTGGAGGTCAGGAGGGGCAACGACGACCTACTCTTCAACATCCAGCCTGATGTCATTATGCAGTAATCATGACGAAAATGACCATCAGTGTATTcaagataaaaaaataataataataatctgaacGTTCTGTAACGTTGCAATGTCACTCATGAACAGGCCCCTTGCTGTTCCAACACCGAGCCCGACGACGTCGTCGGGCAGTAACCATGGCAACTGCGGTGTGGAATCCGGGAGACTGATAAAAGTATATGGACCACCAAACAAACACGCTTGTTGAGAGACCTAGACACTGATAGTTGCCCCTAATcactgatctagggtcagttGTTTGTTTCTCCCCCTAATGGTTGATGATAGTAGGATTTGGGAGGGTAAAATAGGATCCTAGATCTATGCCTAAAGGGTGACTTTTTAACCATTCAGATCCAAGGTGAAGACGATCAACAAACAGAAAAACAGTGTTTGTTTGTTGGAACCTTGATGGGGAAACGATAGACCGACTGAACCTTGTTTGGGAAATCTCCACAGAACTCTGGAGTCCAGATGCATTTAGGACTGAAAGTCCCAGTGAAACCAAACACTTGATTTTTATTGTTATATATGTGTTTTGTATCATCTAAATGTCTTTGTCAAAGCCTACTAGCTGTTACTTGAGAATTACTTACTCCAAATGCAAGCGATCATTGGTAAGACAAGTTTTAGCATAATAGATGTTTCAATTGTTACATTGCTTTTATGGCCTTTTAAATCTGTTAGAATAGAAATAATTTCTGTATATACGAGTAGCTGTGTCCAATGCTGTCGGTTCGGAACCATTCCCCTAACCAACTGTGAATGTTATTTGGTCAGTTATAGGTTGAAAGAAAGATCACATTTTGGTCAGAAATGGTCAGTTGaaagaaatacattatttttCAGCTGGTAAAATGTAAGCAAACGTCTGATTTGAATCTGTTGCTGTATTCTTGCGGTCTTCTACTATAACCGACACGTTGGTAACACTTTCCATTAATGTCCCCTTTATGAAGGTGTTATGAGATGTTCATAAGTAGTTTACAATACCAACTTGTGCTTAAAATATGAATAAATAAACTCACTTTACAGGCAGTGAGTTATATATTAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880326 lncRNA downstream 3861 12547908 ~ 12548264 (-) True G772653
TU880319 lncRNA downstream 8717 12543191 ~ 12543408 (-) True G772646
TU880318 lncRNA downstream 9347 12542455 ~ 12542778 (-) True G772645
TU880316 lncRNA downstream 11554 12540280 ~ 12540571 (-) True G772643
TU880313 lncRNA downstream 16401 12535468 ~ 12535724 (-) True G772640
TU880331 lncRNA upstream 4144 12566380 ~ 12566818 (-) True LOC110531482
TU880332 lncRNA upstream 22176 12584412 ~ 12584664 (-) True G772658
TU880337 lncRNA upstream 22508 12584744 ~ 12585399 (-) True G772661
TU880341 lncRNA upstream 27171 12589407 ~ 12589765 (-) True G772665
TU880362 lncRNA upstream 81731 12643967 ~ 12644277 (-) True G772686
XM_021614682.2 mRNA downstream 44384 12484761 ~ 12507741 (-) True senp3b
XM_021614681.2 mRNA downstream 72733 12468805 ~ 12479392 (-) True LOC110531476
XR_005053465.1 mRNA downstream 76476 12475507 ~ 12475649 (-) True LOC118966199
XR_005053466.1 mRNA downstream 78333 12473668 ~ 12473792 (-) True LOC118966200
XR_005053463.1 mRNA downstream 81007 12470976 ~ 12471118 (-) True LOC118966197
XM_021614686.2 mRNA upstream 4146 12566382 ~ 12583501 (-) False LOC110531482
XM_021614687.2 mRNA upstream 4146 12566382 ~ 12583501 (-) False LOC110531482
XM_036987361.1 mRNA upstream 33649 12595885 ~ 12635228 (-) True LOC110531484
trnaa-ugc-29 mRNA upstream 91483 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_036987371.1 mRNA upstream 294330 12856566 ~ 12868291 (-) False LOC110531492
TU879101 other downstream 580771 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 663410 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 763556 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 775513 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 850542 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 432033 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 432033 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1028017 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1134943 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1418092 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile