RNA id: XM_036989207.1


Basic Information

Item Value
RNA id XM_036989207.1
length 2852
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110531544
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14213446 ~ 14223844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCCACAGCGCCATTTCGTGTTAACTGGTTCAAGGTACAGTACAATCTGCCTACTGAATTGGAAACGGATCATATAAGACACCAACCAACACAACGTCGAAATTGTACTCATTTTTCAATAATTGAGCTCCTGGTGAGTATTTTGAATCGAGAacatttttcagattttttttttcttttttttttcttttttactttGAGCTGATCTCTTTCggactttttatttttttgttttgaatgGATTTTTCTGGCTGCATTCTCTGAATTTGTGTTGGCTTTTAAAGGCGTGCATTTTGTTGCAGCGAcgggtggaaaacaggctgcgcGTGACTAGTATTGGTTAGCTCTCTACACAGCGGTAATTTTTTTGCTTTACTTTTCGAATTAGGACTTTTGAACCTTCATTTTTCCAAGTTTACCATAAGAGCATTTTGTGTGTTTTATGGTAATATTTTTATGTGAAGAAAGATCGAAGGTTGTTTCCAATCTGACTGGACAAATGATTAGGCCTAGTAGTATGTGGTCAACATCATGGTCGTCTTTTCCCCACCCAGGAATGACGTTTTTAACAGggtttttatactgttcaacctTTTCATTTTAAGACCCAGTAACATGAATTTCGGTTGTTGAAGTTGACTGCTCAGAAATATTTCCAACGTTTTCTTTTTGGCTTTCTTATTTTTGAGGTTCGCAACAGTGCTCTCTGCATTAGCCCTATTTCTCGAAACAATGACGTAATTTCTGAGGCATTATCTTTTTTCACTATGAAGAGTGAAAGTGGGCGTTCGTTTGCACTGGAATACAAACAATACGGTGTATTGTaaacaggtaggcaggcaggcaggcagaccacGACCGTCCAGGGTACAGGCAATATGGATAGCTTGATGGCTGGCAACGTTACCAACAAGACTGACCCTCGCTCCCTCAACTCCCGGGTCTTCATCGGGAACCTCAACACTCTCCTGGTCACCAAGGCAGACGTGGAGGCCATCTTCAGCAAGTACGGCAAGATAGTGGGCTGCTCCGTGCACAAGGGGTTCGCCTTTGTCCAGTATGCCAATGAAAGGAATGCCCGGGCCGCCGTAGGGGGCGAGGATGGGAGGATGATCGTAGGACAGGTGCTGGacattaACCTTGCTTGCGAACCGAAGCATCAGAGATTGAAGACTGTGAAGCGCTCTGCGGGAGATATGTACAGTTCTTCATTTGATTTGGAATATGACTTCCAGAGAGATTACTATGACCGGATGTACCCGTACCAGTCCCGCgtgccccctccacctcctccccccctGTCCCGGGCGGTGATCCCCTCCAAGCGGCCCCGGGTCAGTTTGAGTGGAGgcggtggaggaagaggaggtggaggagcaggGGGCAGCCGACGCACCAAGACCAACTTCTCATCCtccaggagcagccagagcagggTCTCCACCTCAcgcaccaTGAAGGCAGATGACCTGCAGACCATCAAGAGAGAGCTGACCCAGATCAAACACAAGGTGGACTACCTGCTGGAGAGTCTGGAACGCATGGAGAAGGACCACACCAAGAAGTTAGacATGAAGAGTAGTGGGAAGCCGGAACTCGGGGAGGTGTCTCCTCTCCACTGTGGAGGAAAGAAGGAGGAGAGcttgaagagggagagggagagccaaCTGCTCAATGACTccgaagaggaggagggagacctactggaggaggaggaggagGTGAAGAGTCGGGGAAGGGAAGATgacgatgaagaggaggaaggtgaggaTGATGGAGATAGCGCCAACGGAGACGACTCTTAAACACCGCAAGATTGTCTGTTCGCACACACTTACatacatacaggcacacacacacactccctgacaTACACAAAATGAAATGTGTATAATTACATAGCAACACACATGCAGTACATGGACAGCTGTTCCTACTGAACTCACTATTCATATGGACATTTCCACTATACCATTCTGAACGTGTGCTCACCTACACATTCAGTAACACTCTACCAGTTATGTCAAGCAAATATCTGTCCCTTTTCTTCTCTTTGGGTTTCTCTCTGATGTATTAGTTTGTAGCCTCATACGGCCATCCTGATCTCTCCATTTACATTATTTGTGAATTGAAATGAAATGAGAGAGCGTGCGCAGCAGTCAGGTTGGTGGACCAGGCTAATTATTTGGCCCCAGATCAAAGATTTTCTTTATGTATACCGTATGTATCTTGAAAAATACTTTTATTCTAGTTGTACTAGTCCGGATACAGTGgatctcaaacctctcctcagagACCCCCAGTCGTTCCATGTTTTTGATCTATTCCacagctagcacacctgattcaactaatcatcatgTTCTTGACTAGGGCAATCAGACGAGTTAGTTCAGGGCTCCACAACATTGTGAAACATCTGGGGGTCCCGAGAGGTTTTAAAACCATTGGACTGGAGGATCTTGGCACCTGCTGCGTCCACCAGCAGGTGGCACTGTGCAATGACATTTTTACACACCTAGGCCCGTGAAATGTGGTGCTGGAGTTGGAAGATTTTACAATGACCATATTATAAAAATCGTAAACAATGAAACAGACATGTATAGGAAGATTTCATGCCAGGATTGTCTAATGTATGCCGTTTTCTTTGCCCTGAATGGTTTTGCTTGTTTCTTTTTTAGCTTACTTATTTGTGTCAGGAAATACAGTTTGACTTAGTATAACCTTGAGTTCTGTAATGGATGTTATCCATGTTGGTGTGTTTGTCTCGGTTGCCGTGTGATTTCAGTTGACCATTACTTTGACTGTGCTTGTGAATTAAAAACTTCCAAGTGGGAATGATCCAGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882109 lncRNA downstream 90255 14114285 ~ 14123191 (-) True G774181
TU882087 lncRNA downstream 110630 14075965 ~ 14102816 (-) True G774159
TU882086 lncRNA downstream 138849 14074355 ~ 14074597 (-) True G774158
TU882057 lncRNA downstream 187600 14022694 ~ 14025846 (-) True LOC110531549
TU881139 lncRNA downstream 211428 13988898 ~ 14002018 (-) True LOC110531539
TU882174 lncRNA upstream 87637 14311460 ~ 14331902 (-) False LOC110531554
TU882229 lncRNA upstream 112696 14336519 ~ 14336804 (-) True G774281
TU882233 lncRNA upstream 116437 14340260 ~ 14340725 (-) True G774285
TU882242 lncRNA upstream 137132 14360955 ~ 14361175 (-) True G774294
TU882191 lncRNA upstream 147523 14371346 ~ 14371628 (-) True G774246
XM_036989203.1 mRNA downstream 22134 14154349 ~ 14191312 (-) True ndrg2
XM_036989212.1 mRNA downstream 125171 14070035 ~ 14088275 (-) False LOC110531545
XM_021614759.2 mRNA downstream 125171 14083846 ~ 14088275 (-) True LOC110531545
XM_036989256.1 mRNA downstream 168933 14042284 ~ 14044513 (-) True LOC110532929
XM_036989219.1 mRNA downstream 173717 14033558 ~ 14039729 (-) True LOC110531540
XM_036989185.1 mRNA upstream 1962 14225785 ~ 14231094 (-) True si:ch211-63p21.2
XR_005053430.1 mRNA upstream 25711 14249534 ~ 14250908 (-) False LOC118966145
XR_005053179.1 mRNA upstream 31656 14255479 ~ 14259219 (-) True LOC110532998
XM_021614779.2 mRNA upstream 58982 14282805 ~ 14287169 (-) True si:ch211-63p21.8
XM_021614780.2 mRNA upstream 70538 14294361 ~ 14310555 (-) False LOC110531552
TU881137 other downstream 225864 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 514118 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 621358 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 1217036 12994269 ~ 12996410 (-) False G772877
TU882202 other upstream 25578 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 500231 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1014235 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1128484 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1401379 15625202 ~ 15625920 (-) True G774954

Expression Profile