RNA id: XM_021614855.2


Basic Information

Item Value
RNA id XM_021614855.2
length 3207
RNA type mRNA
GC content 0.55
exon number 22
gene id LOC110531585
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14633925 ~ 14646754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTGAAATTTCCCATCGTGCCTTTCGAGATTCGCCTGGTTCTCGTTGCTGTCGTTTCTGTTGTTTCTGTAGAGAGCCATTGATCGGTAGAATTTCGAGATGGCATCTGACGGACCGCCGGGGACCGAACCTATCCCCTCCGACTTGGGGAGCTCTGTGGCGGCCCTCAATACATGGACCAACCCAGAGCTTCAGGCCAAGCTAGGCGAGCTAGGCGCACCCAACATGGGTCCCAGAGAGGAGATGCTGGACAGGCTTAAGGGATACATGATGCAGACTGGAATGATGCTCAGCAAACCCAACCTAGGGAGTGATGATAAACCTATGACCCCGCAGATGCCAGGAATCCCCCCCATGCCCCCGATGCCCATGCCCCCCATGCCTCCTGGTATGGGTATGCTCCAGGCGATGAGCATGATGGCAGGTGGACCCCCTCCACCAGGGATGCGTATGGGCATGGAGCCTCCAGGCATGCCCCCCAGCCTCTCCCAGGAGGACCAGCTGAAGATGGTGCAGCAGAGGGCTGCCATGATGATGCAGCACGAGGAGAGGGCCAAGCAGCAGgGGGAGTCCCGCGCTATGGAAGAGCACATGAAGGAGCAGGAACTTCTGGAGCAGCAGAAAAGGgCGGCGGTGATGCTGGAACATGAGAGGCAGCAGGAGCTGGCTAAGAGGCAGCATGGAGGACCAGggcccaggatgtctgacccagGGTCACGACCACCTGGCATGATGCCCCCCATGATGAGAGGTGTGAACCCTCCTGGAATGAACCCACCCCCTCCTGGAATGAATCCCCCCCCTCCTGGAATGAATCCTGGTGGAATGAACCCACCTCCTCCTGGAATGTCCATGATGCatacccagagacagagagttcCCCCTCCACCAGGAGAGGACGCCAGAGAGgtgtggcAGGGAGAGGATGTGGGTGTCGGTCCTAAGATCCCCCAGGCTCTGGAAAAGATTCTCCAACTGAAGGAGATCAGACAGGAGCAGCTCGGCGCCACCCCCACAGaagaggaggaggaggagagcccaGAGATGGAGATGAACAACTCCTCCGCTGCCGTCCTGTCTGAGACTGAAGAGGACGACGGTTCTCTCTCTAAGAAAGACAAAAATCGTAAGCGCAGGAACCGTaagaagaagaacaagaagagGCGTGAGCAGGAGAAGAGGGAGCAtgcagaggagaagaaagaggaggatggagagaaggagaaagagccTGAGGTGGAGATCGAGTATATTACAGAGGAACCGGAGATCTACGATCCTAACTTCATCTTCTTCAAGAGGATCTTTGAGGCCTTCAAGctGACTGATGACgtgaagaaggagaaggagaaggaaccGGAGAAGGAGCCGGCTCCTGCTCTAATGAGGAAGAAGGGATTTGAGGAGGAAAAGAAAGACAGCGACGACAGTGACGATgagaTCAGACCAGATGTTCCCAAGATGTCTAAGAAGAAGCTGAGGAGAATGAACAGACTAACTGTGGCTGAACTCAAACAGTTGGTGGCGCGTCCTGACGTGGTGGAGATGCACGACGTGACGGCGCAGGAACCCAAGCTGCTGGTTCACCTGAAGGCCACCAGGAACACGGTGCCCGTCCCCCGACACTGGTGCTTCAAGAGGAAGTACCTCCAGGGCAAGAGGGGTATCGAGAAGCCCCCTTTCGAGCTGCCAGAGTTCATCAAGAGGACAGGCATCCAGGAGATGAGAGAAGCTTTACAGGAGAAGGAGGATGCCAAGACCATGAAGACCAAGATGAGGGAGAAGGTGCGTCCCAAGATGGGCAAGATCGACATCGACTACCAGAAGCTCCACGACGCCTTCTTCAAGTGGCAGATGAAGCCTAAACTCTCCATCCACGGTGACCTCTACTACGAGGGGAAGGAGTTTGAGACGAGGCTGAAGGAGAAGAAGCCAGGCGACCTGTCAGATGAGCTGCGTATTGCTCTGGGCATGCCCGTTGGACCGAACTCCCACAAGGTTCCCCCTCCCTGGCTGATCGCCATGCAGAGATACGGCCCCCCTCCCTCCTACCCCAACCTCAAGATCCCCGGGCTCAACTCCCCTATCCCTGAGagctgTTCGTTCGGTTACCATGCTGGTGGTTGGGGGAAGCCTCCTGTAGATGAGACAGGAAAGCCTCTGTACGGTGATGTGTTCGGGACCAACGCCGTCGACTTCCAGgctaaggcggaggaggaggaggtggatcGTACGCCGTGGGGAGAGCTGGAGCCTTCAGACGAGGAGTCTtccgaggaagaggaggaggatgagagtgaTGAGGAGAAGCCAGACGAAACCGGCTTCTTCACACCAGCAGACAGtggtcTGATCACTCCCGGAGGCTTCTCGTCGGTACCTGCTGGTATGGAGACTCCAGAGCTCATTGAGCTGAGGAAGAAGAAGATCGAGGAGGCTATGGACGGgaatgAGACTCCTCAGCTGTTCACGGTGCTCCCAGAGAGGAGAACGGGCTCTGGAGGAGCAGCCATGATGGCATCCACACACATCTACGACGTATCAGGGgccATGGCGGGTCGTAAGGCGGGCGGAGGCCAGGAGTTCCAAGGGGTAGAAGTGGCTCTGGCCCCAGAGGAGCTGGAGCTGGACCCCATGGCCATGACTCAGAAGTACGAGGAGCACGTCAGGAACCAGGAGGCCCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCCGAGCACGCCGCCAAACAGAAGCAAAAGAAGAGGAAGGCCCAGCCTCAAGACACACGAGGAGGTGCCAAGAAATACAAAGAGTTCAAGTTTTAGACCACCAATAACGCACCAGGAGGAAATGGGAAGAGAGGACAGGCCGAACAAGACGAGCTCAGATTTGAACCCACACAAAACCATCCGTTAATAAAGTTGTCTTTTCCTCTTAATGACAATGATAATGCGTATCTGGCAGGActggggtcaattccattacAATTCCAGTCCATTTTGGAAaataaaccaaattccaattttcataattgaagagaattggaatgtTTGTACTTctggaattgaaattgaattgagcccaaccctggtgTTCTGGAGAACCGTTGCCAGGTCTCCACTGTAGGCAGAATTTATATAACCCATCTATTCTGTCCTGTGTGACTACTTTCCATGTAGCTGTGCTTTTCTCTTTTTGTAAATAAAAGACTCCATGTCAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12829 SF3B2, SAP145, CUS1; splicing factor 3B subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882355 lncRNA downstream 3106 14630533 ~ 14630845 (-) True G774393
TU882342 lncRNA downstream 34081 14596675 ~ 14599870 (-) True G774383
TU882256 lncRNA downstream 99213 14532167 ~ 14534738 (-) False LOC110531563
TU882380 lncRNA upstream 53546 14700300 ~ 14700618 (-) True G774416
TU882393 lncRNA upstream 63270 14710024 ~ 14710230 (-) True G774424
TU882387 lncRNA upstream 69751 14716505 ~ 14718146 (-) True G774419
TU882400 lncRNA upstream 78177 14724931 ~ 14727701 (-) True G774428
TU882403 lncRNA upstream 84114 14730868 ~ 14735439 (-) True G774430
XM_036987390.1 mRNA downstream 7136 14531994 ~ 14626815 (-) False LOC110531563
XM_036987389.1 mRNA downstream 7137 14531994 ~ 14626814 (-) False LOC110531563
XM_036987388.1 mRNA downstream 102447 14509040 ~ 14531504 (-) True LOC110531564
XM_021614802.2 mRNA downstream 102449 14509040 ~ 14531502 (-) False LOC110531564
XM_021614801.2 mRNA downstream 102453 14509040 ~ 14531498 (-) False LOC110531564
XM_021614853.2 mRNA upstream 41180 14687934 ~ 14692367 (-) True LOC110531584
XM_021614849.2 mRNA upstream 145922 14792676 ~ 14803212 (-) True LOC110531581
LOC118966000 mRNA upstream 371277 15018031 ~ 15035380 (-) True LOC118966000
XM_021614813.2 mRNA upstream 617412 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 617413 15264167 ~ 15268722 (-) False LOC110531572
TU882202 other downstream 379794 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 646369 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 934623 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1041863 13590253 ~ 13592088 (-) True G773163
TU880579 other downstream 1637541 12994269 ~ 12996410 (-) True G772877
TU882399 other upstream 77300 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 591304 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 705553 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 978448 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1135603 15782357 ~ 15787606 (-) False LOC110531603

Expression Profile