RNA id: trnap-agg-111


Basic Information

Item Value
RNA id trnap-agg-111
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnap-agg-111
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36557328 ~ 36557399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattcttgcttagggtgcgagaggtcccgggttcaaatcccggatgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909659 lncRNA upstream 18829 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 20846 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 33664 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 62276 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 97910 36447598 ~ 36459418 (+) True G799200
TU909661 lncRNA downstream 5993 36563392 ~ 36585315 (+) True G799221
TU909664 lncRNA downstream 53468 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 73892 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 82431 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 87911 36645310 ~ 36645631 (+) True G799249
trnap-agg-110 mRNA upstream 1332 36555925 ~ 36555996 (+) True trnap-agg-110
trnap-agg-109 mRNA upstream 2563 36554694 ~ 36554765 (+) True trnap-agg-109
trnap-agg-108 mRNA upstream 3794 36553463 ~ 36553534 (+) True trnap-agg-108
trnap-agg-107 mRNA upstream 5197 36552060 ~ 36552131 (+) True trnap-agg-107
trnap-agg-106 mRNA upstream 6017 36551240 ~ 36551311 (+) True trnap-agg-106
trnap-agg-112 mRNA downstream 1332 36558731 ~ 36558802 (+) True trnap-agg-112
trnap-agg-113 mRNA downstream 2563 36559962 ~ 36560033 (+) True trnap-agg-113
trnap-agg-114 mRNA downstream 3794 36561193 ~ 36561264 (+) True trnap-agg-114
trnap-agg-115 mRNA downstream 5197 36562596 ~ 36562667 (+) True trnap-agg-115
trnap-agg-116 mRNA downstream 6600 36563999 ~ 36564070 (+) True trnap-agg-116
TU909468 other upstream 240523 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1185180 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2000706 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2435588 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3969940 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 477019 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1009846 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1512817 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2230662 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2375553 38932952 ~ 38933868 (+) True G801851