RNA id: XM_036987943.1


Basic Information

Item Value
RNA id XM_036987943.1
length 8892
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110531165
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39111355 ~ 39237408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCAGCCACAAGCTGGCTTCTTGGGCTTCGGGAGTGTTTCCCATTTAAACAAACACAGCGCTGAAGATGGCGGAGAGTTAATAGCGAAACGAAGAAGATATCGGTGCGCTCACAGAGATACATCGATTTGGTGCTGATATGTGTACACGATGAGTGGACTGGGGGACAACTCCATGGAGCCTTTGAGCTCAGAAAACCGAAAACGCAAGCTCTCCACCTGCGACACGCCCAGTCTGGGGTGTGAGCGAAGGCGGCGGGAGCAGGAGAGTAAATACATTGAGGAGCTGGCCGAACTGATCTCTGCCAATCTCAGTGACATCGACAGCTTCAACGTCAAGCCAGACAAGTGTGCTATCCTCAAGGAGACGGTGCGCCAGATCAGACAGATCAAGGAGCAGGGCAAAGCGTCCTCCAACGATGACGATGTTCAGAAGTCAGATGTGTCCTCCACGGGACAGGGGGTCATCGACAAGGACCACCTGGGGCCGCTCCTGCTGCAGGCCCTGGATGGCTTTTTATTTGTGGTGAACCGGGAGGGCAGCATTGTGTTTGTCTCTGACAACGTGACCCAGTACCTGCAGTACAAACAGGAGGAGCTCATCAACACCTCCGCCTACAACATCCTCCATGAGGACGACAGGGAGGAGTTCCACAAGAACCTGCCCAAGACCAACGTGAATGGGGTGTCCTGGGGGGGGGAGGCGCCCCGGCAGAAGAGCCACACCTTCAACTGCCGCATGCTGGTCAAGTTTGGCAACACCCACGGGCCTGTAGAGGAGGGGCACGGAGGACCGCGCTACGAGACCATGCAATGCTTCGCCCTGACCCAGCCCAAGGCCATGATCGAAGACGGGGAAGACCTGCAGTCGTGTATGATCTGTGTGGCCCGTCGTGTGACCGCtgtggagagaacagagagcttCAACACCCGACACGAGCTCACAGGTAAGCTGATCCAGATAGACCAGAACTCTCTGCGTGCGTCAATGCGTCCTGGCTGGGAGGACCTGCTGAGGCGCTGTATCCAGATGTTCCTACAGCACAGCGACGGACAGCCCTGGTCCCACAAACGGCACTACCACGAGgctttcCTGCAGGGTCACGCTGAGACCCCCTTATACCGCTTCTCCCTGTCAGACGGCACCCCTGTCACGGCCCAGACCAAGAGCAAGCTGTACCGCCACCCCATGAGCAATGAACCCCAGGGCTTCATCTCCACTCACCTGCtacagagGGAGCAGAATGGCTATCGCTCTGCCCAGACTGGTGGCATGATGCCTGGGGCTATGAGGCAGCAGGGCATGGGGGGCCCCAACCCCAACGCCCAGATGAACATGCCCCCTGGCGcagggatggggatggggggtaTGAACCGGGGCTATGGGCCCATGAATGAACAGAGCCACATGGGACAGATGGGAGGGGGCTCAATGTACGGAGGAAatggaggtgggggtgggggtggcgGTGGAGGCATGGGCAACAGAATGATGCAGATGAATCAGATGAATCAAATGAACCATATGGGCCAGATGAACCAAATGAATCAGATGGGTCATCAGATGAACCACCCGGGTCCAGGGAACCACCCAGGCATGCAGCATCCTCAGCACCCACAGCAGCACCCCTTCCAAAGCAGTGGGGGGTACGGACTTGGGGGTATGAGCAGCCCCTTGGGGAGCCCCCGGATGAGTGGCCCTCAGCAGGGGTTCCTGATGTCCCCCCGAAATCGAGGCAGCCCCAAGATGGGCGCCAGTCAGTTCTCTCCTGGAGGCATGCACTCCCCCATAGGCcctcatggaggaggaggtgtgggaggAGGTGGCACCTCCTTTTCCAGCAGCTCCCTCAACGCCCTCCAGGCCATCAGCGAGGGGGTCGGGAGCTCCCTCCCTTCGACCCTCGCCTCCCCCTCCCCGGCCCACAAACCAGACAGCTCCCCCAgcatccactcctcctctcagtcCTCCCAGCCAAGCCAGCCGGCCAAACCAGGCCCGGACGGCTCCAAAAGCCCACCTGGGCCCGGCGAGCACCaccaccccctccaccaccaccacccacacacCCAGGCAGAGGGCTGCGGAGACCGGCTGGACAGCCAGGCCATGGCAGGCAGCAAGGAGCCTGGAGAGGGGGCCAGCGAGGCTGGGGTGGCCAGCTCAGAACCCACCCGGAGAGTCCCAGACAGTAAGGGCCATAAGAAGCTGCTGCAGCTGCTGACCTCCCCCACTGAGGAGCTGGGGTTAGGGGGAACCGGTCCGGCCTTGCCATCTGTACCTCCCCCACCAGGCAGCAGCAACATCCCAGCAGGGTCTGACACTAAGGACCCCACAGGAGGCATGACCAGCCCTTCCTCTACCggagtctcctcctcttcctcggcCTCCACCATTCAGGGCCCGGCGTCAGGCCCAGGTGGCGCTGCTTTGGCCAATGCTCTGGCCTCGGCCCACTACACGGCGTCGCTGCAGGAGAAGCACAAGATCCTCCACAAGCTGCTGCAGAACAGCAACACTCCCGACGAGGTGGCCAAGATCACAGCCGAGGCAACTGGGAAGGTGACCCTGGGGGGCCAGGAGGTCCCAGGGGAGACGggggctgggggaggaggagcaggaggagtgaCTGAGCCCAAGCAGGAGCAGCACAGCCCCAAGAAGGAGAAGACCCACGCGCTCCTCCACTACCTCCTCAACAAGGACGACACTAAAGAGCCCGTGGACGTGAAGCCCAAGCCTGAGGAGCTGGAAGGAAAGGGCCCCCCAGGAGCCACTGCCGGTCCCCCATCCAGAGGCCCTGGACCCACCCCTGAACATCCAGAAAGCAAGATCAAGTCAGAGCCACCTGATGAGTTGGAGAACCTGGAATCCATCCTGGGAGGTCTGAGGGGTTCTGGCTCTGAGTTCTACccagagcagggaggaggaggaggaggaggtgctaATGAAGGAGGGAACAAGGCCCAGGGTTGCCTCGATGACAACCTACAAGGGAGTCCGGGGATGGCCCCTGGCCAACGAGGGCCCTTTCAGAGGGCCATGTCAGTGGACGCCAAGCCCCTCGGCGGTCCTGGAGGGGCGGGGAGGCGTCCCATGCTCATCAAACAGGAGAATATGTTGAGCAGCCCAGACGGATACCCGGGGAACATGGGTGTGTGTCCGCGAGGCGTTGGAACAAGGCCGATGAACAGGGGCATGGGGGTTCCCCAGCGCTCTCCCATGGGGGGGTCAGGGGATTGGGGGATGCCCCGCTCCAGTGCCAGCCCCGTGGGCTCAGCCGGTCACCCTTCTATGATCCGCCCTGGCATGGACTACAACTCCAAAGGCATGATGGGAGGTCCCATGGTGGGCAGGTCCAACAGTGTTCCTGGCACTAGATCCATGCTGCAGCAACAGCTGATGGACTTGGgatgtTCTGgtgagatggggatggggatgagtCCGTTCAGTCAGCAGGGCCAGCCCAACCAGTCTCCCTCCTGGCCTGACAGTGTGATGGGCATGGAGGGCAACCACAACAGGCGTCAGTTTGGGAACGCCCTGGACGAGCTCCTGGCTCCGCCCACCACCAGCGAGGGCCAGAGTGACGAGCGAGCGCTGCTGGACCAGCTGGactctctgctcaacaacacggATGGCATCGCCCTGGAGGAGATCGACCGGGCCCTGGGCATCCCCGACTTGGTCAGCCAGGGCCAGGGGCCAGAGCAGCACGGTGAGCCCTTCCCCGGCCAGGACCCCTCCATGGTGCTAGAGCAGAAGCCTCTGTACGGCCAGGGCTACCCCGGCCCCCCCtccatggccatgcagtcagCCTACGGGGGGAGCCCCATTCAGggccagctccaacaggggagctTCGGCCCCATGCTCTCCCAGATGGGCCAGGGGGGCAGCTTCGCGGGGATGGGGGGTATGGGTCACCCTCGCGCCAACATGATGAGACCCAGGATGATGAGCGCCACCAAACCCATGAGGCTCCAGCTGCAACAGAGATTACAGGGCcaacagTTTATGAGTCAGACTCGGCAGGGGATGGCCATGAAGATGGAGAACCCTGGGGCGGGTAACCCTGGCATGAGGCCGGGCATGCAGCCTGGCATGGGGGGACAGCCTGGCTTCCTGAATGCCCAGATGATGGCCCAGCGTAGCAGGGAGATGGTGACCATGCAGATGAGGAGACAGAGGATGATGATGCTaatgcagcagcaacagcagcaggcgGCAGCGGCGGCCGCTGGGGGATTCAGCCCCCCTCCCAACGTCACCGCCCCCGCCGGCATGGACACCCCCATGGGAGGCCCCAACATGGGCCAGCCGGGCCCCCAGCAGTTTGGCTACGGGGGAAACTACGGTATGACCCAGCAGGGTGACCCGTCGTTCGGCCCTGCGGGCGGCAGCCCCCCCAACACTATGATGTCAGGCCGCCTGGGTCCTCAGAATCCCATGATGCAGCAGCATCCCCAGGGCGGACCCATGTACCAGAGTACCGAGATGAAGGGCTGGCCGCAGGGAGGCATGGCCCGCAacagtACGTACCCCCAGCAGCAGTTTGCCCAACAGGGTAACCCTGGGCAGCAGCAGTTTGCCCAACAGGGTAACCCTGGGCAGCAGCAGTTTGCCCAACAGGGTAACCCGGGGCAATACGGGGGCATTATGATAAATGGGGGCATGCCTGCCAACGGAGGAGGGGGCCATATGGGCCAGATGGGGGGCCAGATGGGGATGAACCCCATGGTGATGGGACGTATGCCGATGGGGCCTGATCAGAAATATTGCTGAACCTGAGACCGAGGCGTGTGGTGGAACAGAAACGGACTCAATGTGATCCCTttcagagagaggagtgcagTGCTCAGTGTGTGCCGGACCAAATGTACCTGTGAGTGGTATTCTACTCCCACCAGTTGGGGGTGCTGTTCCTCTGAACTCAAGGACAGTCTCACAAAACAAGACCGAGGACACACTCTATTCTACATGCACTTACATGAGACACGCCAtgacccaccaacacacacacacacactcaaaaacaGTCACGTATGTAAAGCGGAGAcgcactgtgacacacacacacaaactgacagATACACAACTGTTTCATTCCTCCATCAGTCTTTAGTGATGTAGTTTCATTAGTCCTCTCTCTGGGTTCTAtgtctgtactgtactggacACACGCCACTCGCTGGACCAAACAGACTGAAGCGGGGGACACCCAACTAATAATGATCTGGCTCTGACAGACACGGACGGGGGGACGGATGGACAGACATGAGAAGACATCCTCTCGTGGGATGTAACTAACGCTTTGTTCACCCCTGGGCATGGGAATTCTCTCTCTGCTTCGAAACATTGGAGGAATTATTCCCTAGTTCTGGTCCTGAAGGACCACTGTGTATGCAGTGTATCCCATCCGGTCTCTGAATCCACTCTTAATGAATGACATAATACACATGATGTAGTCCCATTGCTGGAGAAGGTGGGAGTTGCTTGTAATCACTGACACAGGGTCAGCTATTTTCACATCCCCCTAATAGTTAATATTAGGgacactgatcctagatctgtggtcaTGGGCAACTTCTACCTCTATAAGATAAATTACTATACTGATGAGCAGGCCTATAGTCAATGAAACAACTCCGAAGTAAGTAATTGAGAGTCAGTATACATACACAGTGGTCCTGCAGGAGACTGGGTTAAGGTACGACAGAAATAAATACTAGTTGGCTGTGATTGCACTTTACGGAAAGGCTGTCGTCAAAAGGATTGTGGAAATATTTCTTGGTCATAGAGGCCTTTACCCAAGAATGAATGCATAACAGAAAATCTTGTTTTGCTTTTGTGTGTGTCGGAGGATGGGGACTATTTTGATTGGAAATGGATTACCGTGACGATCATTATTCTAAATGGTTAACCAATTGAAAGGCAGTAAGCACAGATTTTATAGAACACTTTCTTCTGCAGTGTGTTGATTATGGGAAAGTTAGTGGATTTCAAAGGTTCTGATTATTAAAGTCGATCCTTAAAATGTGCTGACCTATTTCAGAGGGCAAAATTACCCTCAATATCTATACAACTATTCATAAATGATCATTTAAAAAAAGGTGAGTATATTGTATTTTTAAGGAGTAATTCGTAAGATTTACATTCTTGGTTACCTCATGGAACACTTGATAGCGATTTTTTGCCAGTTATTGAATAAGTTAATTCCTAAAGTAATCCACACACTGTGAAAGAAAGGGTATCCCTGATTTTAATGTATGTTTATGCAGATTTCTAGCAATAATATTTTGTCTTGGTTCTCCTGTGAGGGCAAAGTGAAGCATCATTTACTCAAAGTCAAAACGATGGTACTGCAGTATTAGGATACTACTCATCTTGTTTGGATTTTTTAACATTTTGTCTGTGAATATAAATTGTACATACGCTTcaaatgtattatatatatatataaatatatgctTTTGTAGGTCACATACTGTTTTTGCACAGATTGTCAGGCTAGATATTTAAAGTATAATTTTCTTATTATGTCGTAGGTCAAGACAGCTTTTATTTTCAATACTTTAACCATGGGCGAAAAGCAAGGGGCTATTTCTCTGATCAATACTGAAATACTTTGGCTCGATTTCTCTCAGAAAGCTACAACTGCCACTTTTGTTCTCTcagaaaacacttttttttatttgtgaTCTATAAATCATACATTTCTCTTTTTCAAAGACATTGTGTATATTTAGAGATGCTTGTGTGATCCTGTCTTTTTCTATTAAtagatttgttttgttttaagagcaatcaaacacacacaatgCCAGAAGAGGATTTATGTGATTGTGTTAGACTTATGAGGGTCCATGTTTCTTACCAGTGTGTGGATTGATATTTTTTAGATAGGGCCCTATGACTCCAATGGCTCTACTACTCAGGCTCCCAAGTGGCActgtggtctaagacactgcatctcagtgcaaaaggcATCACTGCaatacctggttcaaatccaggctgcatcacatccggttGTGATTGGGAGTTGGCCCAGCGTTTggcggggtaggccgtcattgtaaataagagtttttcttaactgacttaaaaggttaaataaaaaaataaaaatagttccATTCCTTATAATTCCATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGATTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCATTACAATACTCTATAATTGGCCAGGCTACTTAACAGCGACTATGTGCTCACAGGTATGCTATTATAGACAACCCAGAGTCGTTACAATATCAAGACTGCTTCTCTAGTTTTCTCCCCTTCCGTTGGGCACAGATGCTGGTTTGTGGTGGTCGGTTTTTTACTGTATGTGGGCAGTAACACTGCGGTTAGTTATATTTGTGGCTTCGCTTTGTCAATAGGAAGAGTCAGCTCATGTTGAGGAAGGCTGTAAACTAGAGGGTTATTTggatttccctctctctctgtctggtttgAAGGTTATTTTGGGACATTTTACATGGTTTTATGTTGAACCTTGATATTGCATTTACATTGTAGTATTTTCTGTGAAGCTTTGTGAGAAAATCTTTTAAGACATGCTCAATCCAAagatttttgttttgtcattctgCAGTGCTTAGAAACCGGTTGTAGATGGTGCAAGTACTCTACTGGCGTGTGTATTTCTCTGCTGCACAACCTACATGTAATCtgtttttctttgtgtgtgtgtgtgtgtgtgtgtattcccatTCATACACCACATAGAGCTAACATGGGTCTGATTCTGCTGAAGTGATTTTAATCTTGTTTGTAATTGTTGTtttattttcttgattttttttatcTCTTATAATGTATGGCCAGTTCAAAGTTGTGGTGCGGGAAACAGTTGTTTCATGAGATTGACCACTCAGAAAAGAAGCTATTTTAGTGGCACTAACCTGAGGTAGAACGTCTGACGATAAGAGACTATCCCATGGACTCTAAAACTATTTACAATGGCTTCAATGCTATCTTATCTTTTAACACAACGGAGAGTATCTTTAAGCTGTTTGATGGAAACTTCATTACATCATGGAGTAGCCTagagtgattttttttttgtttcagtCTTGATGAAGTATATTAAAAAATATTTGCCTACTGAATATTCAAAATAACTGTTTTCCGTGCttttgcttaaaaaaaaaaagaagattccTCTTGATGTATCTACCCTTTGATTAAGTGGAAAGATGGGGGAATAAAATAAcacttggtgggggggggggggtatacggTCATAATTTCAGGATGTAAATTACTGTTGCATTTTTTTCTTACTTGTTTCTTGATGTTAATATTGATGTAAATACAAATTTCTATTTAAAcatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912841 lncRNA upstream 13582 39097494 ~ 39097781 (+) True G802169
TU912830 lncRNA upstream 23523 39087611 ~ 39087840 (+) True G802158
TU912582 lncRNA upstream 36648 39074471 ~ 39074715 (+) True G801927
TU912579 lncRNA upstream 37261 39073675 ~ 39074102 (+) True G801924
TU912571 lncRNA upstream 66215 39044898 ~ 39045148 (+) True G801920
TU912928 lncRNA downstream 21000 39258408 ~ 39259969 (+) True G802241
TU912985 lncRNA downstream 85208 39322616 ~ 39322837 (+) True G802292
TU912864 lncRNA downstream 88622 39326030 ~ 39330048 (+) False G802191
TU912866 lncRNA downstream 88622 39326030 ~ 39330048 (+) False G802191
TU912867 lncRNA downstream 88622 39326030 ~ 39384896 (+) False G802191
XM_021615603.2 mRNA upstream 38978 39064150 ~ 39072385 (+) False LOC110532019
XM_021615594.2 mRNA upstream 201645 38886624 ~ 38909718 (+) True LOC110532013
XM_021615595.2 mRNA upstream 226716 38868269 ~ 38884647 (+) False LOC110532014
XM_036987925.1 mRNA upstream 226716 38868277 ~ 38884647 (+) True LOC110532014
XM_036987923.1 mRNA upstream 1078140 38022305 ~ 38033223 (+) True LOC110532011
XM_036987944.1 mRNA downstream 2771 39240179 ~ 39256626 (+) True LOC110532020
XM_021615615.2 mRNA downstream 137960 39375368 ~ 39383225 (+) True LOC110532026
XM_021615616.2 mRNA downstream 163627 39401035 ~ 39411199 (+) True ddx23
XM_021615618.2 mRNA downstream 228523 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA downstream 263845 39501253 ~ 39503641 (+) False LOC110532032
TU912578 other upstream 39138 39068372 ~ 39072225 (+) True LOC110532019
TU912489 other upstream 177495 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 323009 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 1039930 38070216 ~ 38071433 (+) False G800834
TU910348 other upstream 1540952 37567245 ~ 37570411 (+) True G799858
TU913019 other downstream 178467 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 178467 39415875 ~ 39417460 (+) False G802324
TU913022 other downstream 178467 39415875 ~ 39417460 (+) False G802324
TU913023 other downstream 178467 39415875 ~ 39417460 (+) False G802324
TU913024 other downstream 178467 39415875 ~ 39417460 (+) True G802324

Expression Profile