RNA id: XM_021615654.2


Basic Information

Item Value
RNA id XM_021615654.2
length 3448
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110532055
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40013096 ~ 40046553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCGCCATGCTGACGTTCTGTGGAGTCATGTGATGAAGCGCTGGTCCTTCCCAGGGTTCACTGAGCGCCGTTTgccccaccccatctatctcataTACTGTTCCCGAAGAGAACATTTATACCTTCAAGAATTGCTTATACGCGTGTTTAATCGTCTTCCACGACCAGTCCAGGAGGGAACTGTCTTCATAGTGGAATGTGTTAGTGCAACACGCGTCATATTTATGAATGTATATGCACATGTAAACTCTACCATTCGAGTTCAGAAGGAATATAAAACAGACTGACAGCGGGCTATACCTGCAAGGAACGGGACAATTCGAATGATTTTCGTGTTTTCGTCATGTTTAGAAGAATCAGAACCCATTTAAGAATTTATTGGGGGCTATCTGAGCGCTATTAGGAGCCTTGCTGATGTGAGGAGGGATACAAATTTCGGCAACAAAAGAAAAGACAGCGAAGGGCCTTTGGATTGAGAAAAACCAGCAAGGAACAGCCATCACAGAAACGGGGGAAAATCACGAAAATTGAATTATTTTGGGGATCTAAACTGAACCGGACTCACCGTTTAGATCGAGGATCATATTGTGGATATAAAAATGAGTTAAATGAAGACGGAAGCAAGGGAAATATTACACATGTAGTTCGTtaagtgtaaatatatatatatttttcctccAGTCTACAGTCTCTGCGCGTAGAAAGGCCGCAGGAAATACGCCTTTTCCCAAAGAGATGTTTATTCTAACCCGTGTCAAAAAAGATCCGGGTCAAATTTTACAGTCGCGTTTTTGTGCTATGCCGATTTTCGGTCTCTGTCACAGGCAACAGTGAGACGTGAGACCCGTGCCGTTCGTGGGCTGAAAATAGGCTTTTTATCCTCTCTTCAATTGAATGTGAGCGAGGCAAAACCCTCAATCAACCTTTAAACCTGTGGATGGTCATCTATATCGGCATATAAAAGCTGTACGTGAAGAAGGAAAAAGCCTAATAGAATTGACCAAACTGAGAGGACGGCCTGGGTATCGTCATCAACAGTCTCCTGCCCTCTTTGACAGTAATATCAGTTGAAAAAGACgcattatatacacacatacttacaaACGCAATAGGACAACGTTTTAAAACAGGCGTTAGTTCGACGTAACATTAAACCACAGCCTGTATACATGTCGTTAATATTCGGCTCAATTCCGTCGGTCAACCGAGAGATCTAGGTTAGTTATTTTTCTTCTTCACCTTCCCCCGGACCCACTTTCTTGCGGGAAGATGGGTTGTTTGGGCAACAGTAAGACTGAAGATCAGCGAAATGAGGAGAAGGTACAAAGAGAAGCCAACAAAAAGATAGAGAAACAGCTTCAGAAGGACAAGCAGCTATATAGAGCAACTCACAGGCTACTACTTTTAGGGGCTGGTGAGTCAGGGAAGAGCACCATAGTGAAGCAGATGCGAATCCTCCATGTGAATGGCTTCAATGCAGAAGAGAAGAAGCAGAAGATTCACGACATCAAGAATAATATTAAAGAAGCTATTGAGACCATAGTAGCGGCTATGAGTACACTGACGCCTCCCGTTCAGCTCGCCAGTCCACACAACCAATGCCGGATCGAATATGTCCTCAATTTAGTCAGTCAGAAGGACTATGAATTCACATCTGAGTTTTATGAGAATGCGAAGACTCTCTGGCAGGACGAGGGCGTGAGGGTGTGTTTTGAGAGATCCAATGAGTACCAGCTGATCGACTGTGCGCAGTACTTTCTAGACAAGATTGATATTGTGAAGCAGAGTGACTACACTCCCACTGATCAGGACCTACTGAGATGCCGAGTGCTCACCTCTGGGATCTTTGAAACCAGATTTCAGGTGGACAAAGTAAATTTCCACATGTTTGATGTTGGTGGGCAAAGGGATGAACGTCGGAAATGGATCCAGTGCTTTAATGATGTAACAGCCATTATTTTCGTGGTGGCCAGTAGCAGCTACAACATGGTGATCCGGGAGGACAATCAGACCAACCGTTTACAGGAGGCTCTCAATCTATTCAAGAACATTTGGAACAACAGGTGGCTGCGGACCATTTCTGTCATCCTATTCCTCAACAAACAGGACCTGCTAGCGGAGAAGGTGTTGGCTGGGAAATCAAAAATCGAAGAGTATTTCCCAGAGTTTGCACGCTACACCACACCGGAtgatgTCTCTCACGCTTCTATAGCAACACCGGAAGCAGGGGAGGATCCGCGTGTCACGAGGGCAAAGTACTTCATACGAGATGAGTTCCTGagGATCAGCACAGCCAGCGGAGATGGCAGGCACTATTGTTACCCCCATTTTACCTGCGCCGTCGACACGGAAAACATCCGCCGGGTCTTCAACGACTGTCGGGACATCATTCAGCGGATGCACCTTCGGCAGTACGAGCTCTTGTGATGGGAGGGGACTGCAACACAGACTCGGAACCCCGACCTCCGGTCCCTCCCTGACCCCCACTCCCGATTCCCTGAAACCCACCCCTGTCGCCCTGACTCTGTGTGCTCTTGGGGACTCCTGAAGTCAAACTAGACATGAGAGCTACAGCGCAACATGGAAATTGCTATTGAAATACTGCAAAACACAGAATACATCCAAGCCAGATCAGCTGAACTCCACAGCATTTTAGCACTGTGCTCAAGACTTGAACCcatttcaccacacacacacacacgggcgcgAGTACGCACACTGACATGGCACCGGGCTGTCTTTCTTTCACAACCTCCGTTCatattttgacacacacacagacacactcttaGGCACACTTAATCTCAGTTTACCCATAACTGCTTGCATACAGAAAAATAACCCCACACGCTTTTACTCGACTGCATGGTCACTGGTCCTGAACTGAGCAAGTCCTGAGTCTTAGCTGCTTGCTGGCTGCAGCCACAGATTGACTGGCTCAGTGTTTTCAATGAATCACAGCCAAGATACCTACCAGGAGCAATTTCAATGACGGACAATGAACCAGAGAAGCATCATGGTGAGCGGGGTTTGGGGGAAGGGAATATTTATGTGAATATGGTGGAGCTTGGACACCATGACACCCACAGGATTGTCACATGACTTTGCCTTGTCGGTACAGCAGCGGAAGGAGAAAGGCCAACGTTCACAGAACTCAACGGAGTGCAAAGcccatatacagtacagtaccatataAGTTAAGAGAAGTCTGATCAGCCCCGTTTCTGTCTCCACGATTTGTTTTGTCTGTGTAGACTGTTGTGCCATTGTGCCCTGtgcgctctctcacacacacactctctctctcgcctctttcactcctccctatcctctcttAACTTCACCACATACCATGCACTGTTACTTTACTGGCAATGCTCTTTGTTATGTTTTTAAAGAAAAAATATCCTGAAATTAAAAAAAGAGGAAGATAACGATAAATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913702 lncRNA upstream 7947 40004923 ~ 40005149 (+) True G802947
TU913700 lncRNA upstream 10083 40002798 ~ 40003013 (+) True G802945
TU913676 lncRNA upstream 50477 39961533 ~ 39962619 (+) True LOC110532054
TU913680 lncRNA upstream 52240 39960555 ~ 39960856 (+) True G802925
TU913677 lncRNA upstream 58626 39952422 ~ 39954470 (+) True G802922
TU913747 lncRNA downstream 21359 40067912 ~ 40068425 (+) True G802978
TU913750 lncRNA downstream 24953 40071506 ~ 40071713 (+) True G802981
TU913765 lncRNA downstream 68486 40115039 ~ 40115538 (+) True G802996
TU913766 lncRNA downstream 70068 40116621 ~ 40116975 (+) True G802997
TU913767 lncRNA downstream 71036 40117589 ~ 40117828 (+) True G802998
XM_021615653.2 mRNA upstream 50110 39961471 ~ 39962986 (+) False LOC110532054
XM_021615650.2 mRNA upstream 67011 39939765 ~ 39946085 (+) True LOC110532052
XM_036987963.1 mRNA upstream 139430 39865883 ~ 39873666 (+) True LOC110531167
XM_021615647.2 mRNA upstream 157157 39849751 ~ 39855939 (+) False stac3
XM_021615658.2 mRNA downstream 10255 40056808 ~ 40063855 (+) True LOC110532057
XM_021615663.2 mRNA downstream 29299 40075852 ~ 40085818 (+) True LOC110532060
XM_036987969.1 mRNA downstream 39458 40086011 ~ 40090648 (+) False LOC110532058
XM_036987968.1 mRNA downstream 39549 40086102 ~ 40089385 (+) False LOC110532058
XM_036987966.1 mRNA downstream 39549 40086102 ~ 40090648 (+) False LOC110532058
TU913576 other upstream 201071 39810327 ~ 39812025 (+) False G802830
TU913578 other upstream 201071 39810327 ~ 39812025 (+) True G802830
TU913563 other upstream 220763 39791917 ~ 39792333 (+) True G802822
TU913562 other upstream 222694 39789657 ~ 39790402 (+) True G802821
TU913483 other upstream 372227 39639254 ~ 39640869 (+) True spryd4
TU914248 other downstream 340212 40386765 ~ 40389052 (+) True LOC110532068
TU914281 other downstream 396343 40442896 ~ 40449939 (+) True G803437
TU914302 other downstream 421075 40467628 ~ 40468002 (+) True G803457
TU914604 other downstream 974383 41020936 ~ 41021502 (+) True G803728
TU914750 other downstream 1388331 41434884 ~ 41435423 (+) False LOC110532096

Expression Profile