RNA id: XM_021616266.2


Basic Information

Item Value
RNA id XM_021616266.2
length 2876
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110532392
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54234796 ~ 54239506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttatgaagaGCAGAGGAATATTGCAGTGGGACTCAGAAGAATCCAGACAACAGGAGTTTTATGTTTTGAACTTCGGAGTAGAGCACAGAGTCATCTCAGGGGTGACAACGGATGTTCAGGTTGAATACAAGAAGATAATTCCTGGTGTGATTGGTGCCCGGCGTCTGACCGATGGGTGAATGGGGAAAAATAAGTAAGTCTGTTGGTCCTGTTGTTTTTTGATAAAGATGAAATACCTACGCATGTGAATCTTGGTTATGTAAGATACGCCGTAAGAGCTTTCGTCCCCAAACCACTGTAGTGTAAGACTTGAAATGATTTGGCGATCTTTCAAGTGTATGCAGACGAACAGAGTAAACTGAAGAACGGTGTGTAGAAAGACGACCGTGTTGCAATTGTGGTGGGGATCATGATCCTGAGTTCCTGAAGTGCCCTTTACGGGTGAACGAGATTGAGATGGCAAACATTTGAGCTGTTAATCGAATATCCTATGCAGAGGCGATTAAAATAATTGAGAAAACATGAAACTGGACATAATTGTGGCTGCGGCAGAAAAGTTTTCAGGATTTAAGGATTTTTCATCAGAATACTTGCAACGGGTACTGGTGCCGGAAGACCCACCCTCCCCTGTGTAGGGACCAGATTGGTATTATTTTTCAATGATGGTAATTTGTTAAATTTTGGGGGGGAATCCTGTTTCCATCCGAAAATCACATTACATTGTGTGATCGCCAAttataccatagaagaagaagaatattGGATAATTTTACAGCCTGTCCAGTAGTTGGCAGTATGAGTCCTTTCTTTGCATGTTTTCGCACAATGGTCTTCATAGAAGAAAAGGCGCGATGTTTGGACTTTTCAGAAAAAACAAACTTGTCAAAATAAGAAGTCTGAATGAAACTACAAAACATGGGGTGGCTGCAACAAGTCTGCAAGAGCTTCTCAAAAAGGGGAGTAAACTCCTACAGGTTCCACTCGTCGGTTCGCATATTTGCTTGTATGAAGATGGAACAGAGTTGTCAGAGGACTATTTCCGAAGTCTTCCAGACAATGCTGAACTTGTCCTTCTTGCCATGGTTGTCTGTGACATAAGCCGGTTGCTGGACACCGACAGGAACTTAGATCTTCTGATTGATGCGGCTAAGGGGCTTCTCTCTGACGAGCGGTCTCCAAAGAGACGCAAACTCCTGGGGGAACTGCTGCTGCATTTGAAGGACAGCTCTGACACTGAAAACAGAGAAGATGATGAAGACTGGTTCCAAGGAATTGATGTCAGATTTAAGACCAAATCGGCCTACATGAAGTACAACTGTGAGAGCAGGATTCGTGGATACATGAAGGAGGTGGATAGTTATGCTCAAACAATCCAAAAGCCTAAACTCAAGGCAGAATACAAGAAGACTGCAGAGTCCTTGATGCTGCAGCTGAAGTCTGACAAGTACAATGGCTGCTACTTCAACAGGACAGAGAAGGAACTCAATCGACTATGCACCAAGGATGGATGGTTCTCCTGTCAGgGTGCGTTTGACCAGGATGAATGCATTTCCCTCCACTCCATCAACCCCTATGGCAACCGAGAGAGCAGGATTCTCTTTAGCACCTGGAACTTGGACCACAGAAATCTCTGTCCCAGGATTGAGAAGAAGAGGACGGTCATTCCTGCCCTGGTGGAAGCACTGCAGAACCGCAAGAGCAGCAACATAAACCTGGACTATTTTTATAAACTGCTGTTCACTCGGGAGAATCTAAAGCTGGTGCATATTGTATGCCACAAGAAAAGTGCCCATGActtgctgtgtgataaaagaaaCATGTACAAATGGGGCAAACGAAAGGGATTATAAAGGGAAAATGCTTTTTACATTTCAGTGCAGATGCCTTTTGTAGTGTTTGTTGTACATTATCTGTTTAAGAATAACCAAGACTTATAACTACTGGTAAATTGAACTAAATGTAATTCAGGGCAGGGAACATTGTTTTCTGCTGCTCTCAGAACAGCTGATTTGTTGATCATTTTGTGCTAGTGATATTAAAAAGAACTCCATTATGAGCCACTGATTGGGTAGTAGTCAATGGGCCAATCCCAAATCGTCCCCTAATCCCTATGCACAGGGTGCATTCAGTGTAATTCAATGCTTGCTACATTGTGTGACGGTTTGTACTGAAAGACACGTGTCTCCCAAAATGGTGCGTACCATGCTTCAACAACCTTTGAGGTAAATTTGTGCCCGTTTGGTGGTTGTGGCCTGATCAATATGGATGTAACTATTTACATTTTGAAACACGTGAAGCACACACCGCACAATCTTCTGGGACGCCATAATCACAATGTTCTTCAACTGGTCGTTCACTACCTTTTTCCGttgaatttaaaatgtaaaacACTGTTTTGTTGTACTGAAGACTTTCCTATCAGATGTCAAGGTGGAGCTATTACCAGATTGATTACACCTGTctaatccatttttttttttttttttacctttatttaactaggcaagtcagttaagaacaaattattattttcaatgacggcctaagaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagctcagggatcttgcaacctttcggttactagtctaacactaaccacaaggctaccctgccactCCAATGCATAGAGAATGATTTGTTTGGACATTTTCATATATATTATAATTTTAATGTGCTCTCATTATATTTGGATGTATATTCTAATTTCATTACTGTTTCCACGATAATTGTGTGGGGTGAACCAATAAAGTATTGAAAGAAAGTTGTCTCAGGTTTGACTATATTGTTTTGGAGTCACGCAGATTTTATTACAGCAGAGCTGttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU931838 lncRNA upstream 3278 54231284 ~ 54231518 (+) True G819407
TU931834 lncRNA upstream 6787 54227571 ~ 54228009 (+) True G819403
TU931833 lncRNA upstream 7551 54226939 ~ 54227245 (+) True G819402
TU931832 lncRNA upstream 9397 54225065 ~ 54225399 (+) True G819401
TU931817 lncRNA upstream 26282 54208311 ~ 54208514 (+) True G819387
TU931802 lncRNA downstream 2356 54241862 ~ 54243615 (+) True G819373
TU931848 lncRNA downstream 8057 54247563 ~ 54249497 (+) False LOC110532396
TU931849 lncRNA downstream 8057 54247563 ~ 54248528 (+) False LOC110532396
TU931842 lncRNA downstream 8286 54247792 ~ 54249497 (+) False LOC110532396
TU931844 lncRNA downstream 8286 54247792 ~ 54248528 (+) False LOC110532396
XR_005053294.1 mRNA upstream 1349 54231749 ~ 54233447 (+) True LOC118966073
XM_021616263.2 mRNA upstream 561298 53596083 ~ 53673498 (+) False LOC110532391
XM_021616262.2 mRNA upstream 809103 53404905 ~ 53425693 (+) False LOC110532390
XM_021616261.2 mRNA upstream 809103 53404919 ~ 53425693 (+) True LOC110532390
XM_021616249.2 mRNA upstream 1020034 53202981 ~ 53214762 (+) False LOC110532385
XM_021616271.2 mRNA downstream 5817 54245323 ~ 54247915 (+) False LOC110532396
XM_021616270.2 mRNA downstream 55516 54295022 ~ 54306173 (+) True LOC110532395
XM_036988340.1 mRNA downstream 687222 54926728 ~ 54934570 (+) True twist3
XM_021616281.2 mRNA downstream 952847 55192353 ~ 55207365 (+) False LOC110532404
XM_036988349.1 mRNA downstream 954048 55193554 ~ 55207365 (+) True LOC110532404
TU929242 other upstream 1507276 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 1909156 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 2888302 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 3155854 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 3434415 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 487365 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 993752 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 1291531 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 1458134 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 1734536 55974042 ~ 55975316 (+) True G821363

Expression Profile