RNA id: XM_036988472.1


Basic Information

Item Value
RNA id XM_036988472.1
length 8739
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC110532462
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 57342345 ~ 57958962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctcccccctcgcgtCGGTGTTCCACTTTGTTATATTGTTGATGAGTGCTCTATTGATCTTCTACACACCAAGGATATTGTTTTACTCATAGCATCATTTAATACCAAGAAACGGTGGGAATTGGGGAAACTGTGCACATAAATTAAATGCAGCATGCTTGGACTTTGGTCAGGATGCCAGTGAATGACATCTGCTCTTCTTAAAGAGAAAGGAAACAGTTTGGCTTTTCAGGGGGACTCtaccaatggaaaatgaagtAGAAGATAACCAGTTCAGAATGTCCATCCTGGAGCGCCTGGAGCAGATGGAGAGACGGATGGCAGAGATGGCCTCCCATCACCAGCAGGGCAGCGGAGGAAGtgcaggagcaggaggaggagcaggaggtggaggaggaggaggtagtggtGGTAACAACAGCCAGACACAGtgtgtgtcGGGGCAGGGTCAGGCGGGCAGCAGCTTTGAGAGccgtgtggtggtggtgtgtgagaAGATGATGAACCGGGCCTGCTGGGCCAAGTCCAAACACCTGATCCACTCCAAGACCTTCAGGGGCATGACCCTGCTCCACCTGGCCGCTGGGCAGGGCTACGCCACCCTCATCCAGACACTCATCAAGTGGCGCACCAAGCATGCAGACAGCATTGACCTGGAGCTGGAGGTGGACCCACTCAATGTGGACCACTTCTCCTGCACCCCTCTGATGTGGGCGTGTGCCCTGGGTCACCTGGAAGCGGCAGTGGTCCTGTATAAGTGGGACCGACGGGCCCTGGCCATCCCTGACTCTCTGGGACGCCTGCCCCTGTCCATCGCCCGCTCCCGCGGCCACACCAAGCTGGCCGAGTGTCTGGAGCAGCTGCAAAGAGAGGAAcagcagccccctgcacctctgcCCCCCACCACGCGCATGtccttctcccccaccccccacGATGCTCCCACCTCAGACAGCTGGATGGTCACATGGGCCAGCGATGGACTGATGGCGCCCGGCGGAAAGAAAGGCGGTAccgctaccaccaccactacctccaccacctccaccaaccTCAACCCAGACTTGAGAAGGCCGAGATCCGAGCCCTCCAACTACTACAGCAGTGAGTGCCAGCGAGACCTTCccttggccaagaaacacaagcccaaCCCGGAGCTGTTCCAGGCCAGGCCCGACAAGGCCATGTCTGTCCCGCTGAGCCTGGAGCAACAGCAGCTCCACAAGCTGTCCTTCAGCACCAAGAGCCCGTCCCCTGAGGGCCTCAGCCCAGACAAAAGTCTCTCGGGTGGGGGAAGCTCTGGAGGAGCAGGGGTAGCCAAGTGGAGCTCTAGGGAGGGTTTCTCCAGCAGGGGCTTAGGCAGAAAGGGTTCAGGGGACTCTGGGGGCAGCAGCCTGGGGAAGGAGAAGCTGGCTAGCAGGCTGAGACAGAGGGAACAGCTGGGGAACATGCTGgtgatggctgagagagagatggtggacaCTGAGCTGTTTTCCTACAGAGAACACCTGGAGAACCAGGACTGTATGACGCAGATGGACGACCTGCAGGACAACATGATGACTCTGGCAGAGCATATCATTGAGGCGACCCCAGAGAGAATCAAGAGGGAGGACTTTGTGGCCCTGGATGGAGTGCCCCTGGACAGTGCTGGGGTCAGCAACACCATGAGCTGGTTGGCCAGTTACCTCGGAGACGTGGAGCAGCTTCCCAGCATCATACAGCTACGATCTCTGTACAGTGATCCTCTGACTCCATCCTCCAGCCCCAGCCCAGGGGGGTCTCCCCTGAGGGAGGGGTCCATGGAGAGGCCCACCCTGCCCTCCCCGGCCGACTGGAGCGAGTTCCTCCAGGCCTCTAACAACAAGGTGGAGAGAGACTTGGCCCAGCTCACCCTGTCCGACCCCGAGCAGAGGGAGCTGTACGAGGCCGCCCGTCTTGTCCAAACTGCCTTCCGCAAGTACAAGGGACGCCCATTCAGAGAGCAACAGGAAGTAGCTGCGGCAGTCATTCAGCGTTGTTACAAGAAATACAAACAGCTAACATGGATAGCCTTGAAGTATGCACTTTATAAGAAGATGACGCAGGCCGCCATTCTTATCCAGAGTAAGTTCCGCAGCTACCAGGAGCAGAAGAAGTTCCAGCAGAGCAGGCGGGCAGCCGTGCTGATCCAGCAGTACTACCGCGGCTACAAGGAGTTTGGCAGGCTCAGGCTCCACCGGCAAGGAGCCGCCGCTGCCCTGGTGCAACACAAACTCAGAAGTAGTCTGCTTTCTAAGAGGCAGGATCAGGCTGCCAGGAAGATCATGAGGTTTCTCCGCCGCTGCCGCCACAGCCCCTTGATGGACCATAGACTGTTCAAGCGGaGTGAACGAATTGAAAAGGGCCAAGGAACATGAAAACCTTCAGAAGAGCCCCCTCACAATGTGACATCACTCTCCTCCTGACTCTTCCTGTTTTCTTTGTCCCTTTATACCCAAAACATTTttcaagagaagaagaaaaaaaaacagttcaGTGAAAACACTGcgattattattactactactacgacaGCGTGGCTGACTCTACTTCTACTTCTAACAACAGCATTTTTCACCTTTATCTTTTCCCTCTGACGTTGTTTATGTTGGAGAGTGTAGAATTAGAAACTAAGGGGAAGAAGCTGTGGGGGGCAGAACATTTGCTTCATGGCATTTTTTGCACTTTTTCATGGATTGTTTTGTCTTTTTGGGAGTATCGGAGTCTAGGTTTAAGACGGTAAAGGAAGAGGAATGCTGGACATGTCTGAAAAGGTCCCTGTGGATCAAAGGAAGAGGATAAGACGCCAAGGATGGAGGCAGATGCCGTCCAGAACACAAGGAAACATGACAGAAGCAGAAACACATTTGGGACTGGGCTGTAAttgtatttcatatttttttaagtGACTGATTATTCcatttgaagaagaaaaaaaatgtaacttaATGAACCAAAAAATCTCAGTAATACATTGATCCATTTGCACACATACACTCCCTGTCGACAGTTAGATGAATACATTCAGTATGGTAACTAGTATGATAAATAGATCAAAATTACCCTTCCTGTTACGCTGTGCTCTACCCCGCCAGTCAGTCCAAAGGGGTGGGGTTACATATGAATGTAGGAGGGGTGTGAGCAGAAATGGGTGGGGCTTATTAAAACAATGGCTTTTTTTGTTATCTAGGTTTGGAGGGGTTATGTACTGTAAGGCAAGGGATAGGGGGATTCAATGGAATTACAATTCTTCTTCTTATTTTTTATATTATTGTTTTATTCTCTTTTCTATTCCTCTTTGCTTGAATCTGTTTTGTGCTCATGCCCATGACCGATTTACAACTGACTTGTCTCTTCAAAACTCTGTGTTGTCGATTTGATCAAATATGCATGCCTATGGGTGAAAATCTTCACCTGTGTGCTGGAGGTTAGGTCTGTATTCTCTGAATTTCAATGCTTTGCTTTTGTCTTCATGTTCAAATGCAACTGAGTGGCCCATGTACCAACCTATTCTCCCAAGAGTCATACCCTCTAGTTCCTGAGATTATACCTACATCCTCATCTTTCCTTTTTCTGTCGCCTTATTTCATTTGTTTCCTCGGTATtctaaaaagaaaagaaaacttGACTCTTTTGTGTTGTAATGATTACAGTCATGAAGGTTATTGTTGTTCTTTTTAAATGAACTTCAGGGCCTGTGAGGGCTTTTGAGGGGAAGATCACATACATTTTAAATGAACTTCAGGGCCTGTGAGGGCTTTTGAGGGGAAGATCACATACATTGCCTTGACGTCTTAGAGATTCTTTGAGGGGTCCCTAAGCTAGTCCCAAAAAAAGGGGTTAGACAAATCCATATTTTTGACAATTGAGCAGTTTCTGTATATAAAGAAGGCTGAAGGTAGGGAAAAACATTTACCCAAAGGGGATTGTATTTTagaaatatattattttattcatTAAAAAGGGGTCAAAAACAGGTATGAGACAAAAACAGAATATTTGTATAGTTTTGTTTGAATGCCTAAGAAGTAtggttgtattgtttgtatatagTGTAAATACCTGGGACAAAAATGAGCTATGTGCATGAAAAACATGAACAAAGGTTAAAAAAAACTCAACAAAAGCAGTAGTGGCTATGCTCTGTAAAATGATTAAAAGTATTTCACTATAagagtattttattttattttgattgttCTTGGGATAAACATTTTGCGAAAGCATGACATTATTGCAAATGCtaaaaacttttaaaaaagaTAACGTATTTAGAGTTAGGAGAAATCTGCAAAATGATCTTAAGACAAGTATGTttatgtttacatttttgttttgggCTACCAAGAATCTTTTGCCAATGGTGCCAAGTAATGTGAATGCTATATTGCTTAACAAGAGAATGAAGTTAATCTTAGCAGAACAGATAATCATACAATGAAATAGACACTAGCATTAAAGACCACACGGTCCCATCCCGACTCAATGAAATAGACACTAGCATTAAAGACCACAAGGTCCCATCCCGACTGGCAGAGGATCACAGATAGAGGTACACATTGTAGAGGGAGAAATATTTCTACAGCAACTTTTAAGTCTCTCATTTCTCTTCTGTTATCACATGTCAGAACAACCCAAGCTTTTTTGCCATCATCACCAAATACACAGGGATCACTGGTCAGTAACATTTTAAGTGCAAAAAAGCCTACTGTATGAGAAAGAGGGATTGCGTTGTTAGTGTGCATGTTTGTATGGATTGTCTTCATATAAAGATTGTAAATGGCAGCCTTGTCCATGTGAATCTCAGccctgttgtttttatttttataattgaGGTTGATTTAACATTTGTTtaataggtagcctagtggttagttcgttgggccagtaaccgaaaggttgctagatggaatccccgagctgacaaggtaaaaatctgttgttctgcccctgaatttgttcttcactgacttgcctagttaaataaaggttaaataaataaaatatatatattaaatcataatttatttaataggacaacacacaggtgATGAAATCATCGAGCTTTGATTATTAAATCATAATTTGTTTAATAGGACAATGCACAGGCGATGACATCATTGAGCGTTGATTATTAAATCATTGAGCGTTGATTATTATATCATTGAGCTTTGATTATTAAATCATTGAGCTTTGATTATTAAATCATTGATCTTTGATTATTAAATCATTGATCTTTGATTATTAAATCATTGAGCTTTGATTATTAAATCATTGATCTTTGATTATTAAATCATTGATCTTTGATTATTAAATCATTGAGCTTTGATTATTAAATCATTGAGCTTTGATTATTAAATCATTGAGCTTTCATTGAGCATTGATTATTAAATCATTGAGCTttggaccgagtttgggaaaccctgaaaTAGACTAGATCAACGTATCAAACTGCTGACACAAGACAATACTTTTTGGGCTGGAGGCTTAACTTGACTAAGGCTGTCAGGGTCTGGACAGACCAGAATTATTCTTTGTCAGAATGTAATGTGGCCACAGTGAACGAGGTACATGTGTAGCGTCTCTCGGCTGGTATTCTTTGTAAAAGTAAATTGGTAATTTACTTACAGGAGGAACACTTGTTTAAACAATCTAAGGTGCTAAAAATAACACAATTAAACAGTGATGTATAGATTATAGTGAAACATATGACCTATTATGGATCAGCACAGCCAAGTCAATGAGCAAAAGTGAGGGATGTATAAACCTGTAAATGTGACAAGATGCACCAGTGGACCGACGTGTTTGAAAGATTATGACATGTGAGTGGTGGGAACAGAAACATTGATACCAGTTGATTTGATCTGTGAGTCCATGATATAGACTATACAGTAGTCTGCTGGTTTTTGCAGTTCTGCTGAAATATATTATATTCATATCAAAACAACCAGGTGGCATTCAAGTGATGACGTTCATTATTCAAACAAGGTGTGAATGCCATTGGACaattatgtgttgttgtttaacTTGCTGAATTTCGTCTCAGACCCTGTTATCTGTTCTGTTTTTAATGATTATATACTGCTGGGTTTATTTCTCTGTATGGTTGTGTTTATTTCACAGAGACTTGATATGTAAACCTATTTTCAGAGTGTTTATGTAGAAAGTGCCTAATCATATCCCGATTGATCGCACAAAGCCAATGTCAGGAAGCATGCGATGTACTGTACCTAAAGGAGAAAAACATGGCTTTGGAGAGAAAAAGATCACCTGAATCCATCATACCATATATCAATCCAAAAACCATCACTAAATTCAGTCCGGTGACAGTCTTCCCTTAACCAACTCAGTATCCCCACGCAATGCGTTCCGTCTTGTCAACATTCTCAGCCTTTTTATTTTCTATTGGAACTGCCTGTTGAAACCATGAGAATTCCATTCCATAACTTTTGTGGTTTTATTGCCTTGCATTCATCATTCAGATAGTGGTAAGAATGCCAGCTAATGCACTGCTGTGGCAATATGGGAAGGTTTTATTATGCTTGCATGGGTAAAATAGTTAACTGGGTGACTGAACTGCACCCAAAGCATGCTTATTTTTCTAAAATCGGTAGTCAGATAGACTTGTAAAAGACTTACTGTTCTGTAAAGCGAAGAACGTTTGTATGACGTGTCACAGAACTCTGAAAGATGGAGGGCAGTTGATTGGAAGGCAGAGAAGAATCCTAAAAATACAAACTATGATCAATCTGCAGTATTTACTGACCATGTTTCTTGGGGTAGCAGGAGGGAAAGTTTTTCTAGAAGCAagtttttttaaattcatttatTCATTTTTATTCATTTGGATCTAAAAATAGTGTGCTCCCAAACCAACAGTATACCGCAAGTATTTTACGaggcaacaacacacagacacacacacacacacgcaggcgaCAGTACATTGCACTGCACACATCCAGATATGTCAGGGCATAGTCAGTCTCACTTGTACACAGTTCAGCAGAGAGAGCTCATCATGTGTTATTTTCCTAGCCTGCTCCTAGTCCTAGAGAACCGCTCACCTCCCTTCTGTATTTTACTCAGGGTGCCAAAATggggaggaggaagtggagcAGGACATTGATGGTGATTCAGTGTAGAGAGAGGACACACTATTGAAATAGTATACAGTGCTTTCTGGATAAAACAGGCAAATTACTACTGATCCTGGATGCATTATTGATATCCATTTCCTCTCAAGTAAGTAAGGTGAGCTGAGGAGAGACGTAATGGCACGATAACAGAACTAGGGGATCCAAGTAATTGTAGTATAGATAATTATAATTAGGACAAGTTCATCACAATTGACCGTATGGTCAATTGTTTCTGTCTTGGCTACAACTGACAAATTAATTTGTAGGCATTATGGGACACTAGGGCTTAAAGTCTTACGTAAATGCTTACCTTTCTTTTATAGACTATGCTTATGAGTCTAGTAACACTTTAACCTTTGACCTCCTCTGGCTTGATGGTTCTCATTAAAATAAGGACTTGCTGTGTGAATCTGTGGTTATGTCATAACATCACACACAGCTTCAAATAGTCTATAAAGCTATTCTCAGTTATACAACATTTCATCTCAGTTAAGATATGGATGATGACATGATGTAACATCTGAATGAGGTCTTCCTGAGACGTACGTTGGGGTAGTTGAAGATGAGGTCTTCCTGAGACGTACGTTGGGGTAGTTGAAGATGAGGTCTTCCTGAGACGTACGTTGGGGTAGTTGAAGATGAGGTCTTCCTGAGACGTACGTTGGGGTAGTTGAAGATGAGGTCTTCCTGAGACGTACGTTGGGGTAGTTGAAGATGACCAGATCTTATAGGGACGGTTTCAAAAAAAGCCCTTCAGTTATGGCCATCTTCTGGATGGTATGACAGGTTAGCTATAACAGGCACTTCATATGGATTTTATTACCTTCATTACACTCTGCTAATTGACCTGAGGGACTGGATGgtatttcctcctcttcctttgtCAATGCACTCAAACTACTGAAAGGTAGGCACATCAAGACAACACAGCAGAAACCATCTCACAACCTTTTCCACTTGTGGACACAGAGCAATAAGCATTATTTTGTGGAGACCTATAGACCTAGTGAAGATAAAGATGATTGGACACATGTAGTCGACGTACTCTTATGCAAATGCCAGTATTGCAAGACAAGCATTCAGTAGTTTATGGACAGCAATTATATGGCACCCTTTACCGAACTGCACGTTTTCATCAATTCCAAACCAAGAAGAAAAAAATGGCCCTGCTTTAATACAAAGTCGTGGGTCCTTGACACTTTGCATGTGAACTAGTGTTAGAgctattttcctctcctctataaCTGTCTTCCTCTCGGTCTTTCCCTGTTATgtgaccctctctttctctccttcccctattATTTCACCCACTCCTTATTTTCGCTTCCCCTATTGTGTTTTGCTTTCTCTCCTttttcttccccctctttctTGTTTGTAAgttttatttttgtaattgtGCATGTACAAGCGTCACTGACTCGATggatatgtttaaaaaaaaagctgCTGAAGCCATGCAAAACGTTTTGAAATGCCCTTAAAATATGGAAGATGTTTTCTGAATGCTTTATATTCTTTCTGctgtaaaataataaaaaaaaataaaaaatgaagaaaacTCTAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936037 lncRNA upstream 83562 57802556 ~ 57839380 (+) True G823260
TU936015 lncRNA upstream 151459 57770399 ~ 57771483 (+) True G823238
TU935976 lncRNA upstream 209476 57712463 ~ 57713466 (+) True G823202
TU935920 lncRNA upstream 277317 57626901 ~ 57645625 (+) True G823156
TU935878 lncRNA upstream 351323 57571201 ~ 57571619 (+) True G823125
TU936105 lncRNA downstream 422 57959384 ~ 57959706 (+) True G823326
TU936128 lncRNA downstream 60654 58019616 ~ 58020570 (+) True LOC110532463
TU936155 lncRNA downstream 68304 58027266 ~ 58027566 (+) True G823371
TU936156 lncRNA downstream 69278 58028240 ~ 58028457 (+) True G823372
TU936161 lncRNA downstream 77442 58036404 ~ 58036696 (+) True G823377
XR_005053471.1 mRNA upstream 559456 57363432 ~ 57363486 (+) True LOC118966205
XR_002474834.2 mRNA upstream 678240 57241333 ~ 57244702 (+) False LOC110532457
XM_021616383.2 mRNA upstream 678240 57241335 ~ 57244702 (+) False LOC110532457
XM_021616382.2 mRNA upstream 678240 57241346 ~ 57244702 (+) False LOC110532457
XM_021616384.2 mRNA upstream 678240 57241606 ~ 57244702 (+) True LOC110532457
XM_036988473.1 mRNA downstream 25227 57984189 ~ 58020592 (+) False LOC110532463
XM_021616396.2 mRNA downstream 25241 57984203 ~ 58020592 (+) False LOC110532463
XM_036988474.1 mRNA downstream 25927 57984889 ~ 58020592 (+) False LOC110532463
XM_021616412.2 mRNA downstream 327483 58286445 ~ 58290128 (+) True apex2
XM_036988487.1 mRNA downstream 339811 58298773 ~ 58321350 (+) False LOC110532471
TU935738 other upstream 7408 57342401 ~ 57915534 (+) False LOC110532462
TU935064 other upstream 1159402 56762625 ~ 56763540 (+) True G822404
TU934932 other upstream 1349985 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 1790006 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 1798757 56119119 ~ 56124185 (+) True LOC110532426
TU936157 other downstream 69657 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 246301 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 288152 58247114 ~ 58250307 (+) True G823459
TU936293 other downstream 429709 58388671 ~ 58390570 (+) True LOC110532478
TU936410 other downstream 560257 58519219 ~ 58535643 (+) True G823580

Expression Profile