RNA id: TU937506


Basic Information

Item Value
RNA id TU937506
length 2601
RNA type TUCP
GC content 0.40
exon number 5
gene id LOC110532492
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58668090 ~ 58671251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCACCCAGCCCGAACAGCAACAACAAACATGGAGGAATATGCCCGTGAACCTTGGTAAAGTACATTTCAGATTAGGCTGAGAAATAAGTAAACCGTTTTCaatattggtccgatctctcttTAGCCAACATACATGGTTAAAGAGTATGCTTCACCATATGGTTATGCCTTTCATGCCTGAGTCATTACAAAAATGATGGTTGAATTTACTAGCAGTAACCTTAAGAGAAATCTGGTGCTTACTTgtcctttttattttttatttaacctttatttaactcctTGCTTTAAATGAGAATTGAAATCGAGAACCAACTTCTCTCGTTGAAAACGACATATGGTCAAACGTTTATTCCAGTGCCAAAAATGGACAAAGTGTaagtattgtaacgaccctgggctTATACATTTTGGTCGTGAAGTCAGTGTCTTTCAACGGTGAGTTTTATAAAATGTTGCGTACAAGAGTTTGTCAGGACTTACTTTagggttattttatttattttctataaAGCCCACCAATACTGGATATATATATAGCTGCGGTGATTGCACTTTATCCAATACATATTGCAGAACAcacagacctgcccagcagctCAGTAGATCGGACTTTGTTTGCTTAAGACAACACGGTGCATGTTTTTACTTGAGAAATGCTGCAGCAAACACTTTAGgtagatgtaaaattgcgtgaATAAAAccttataaaaaaaaatactaaaaagTAAATACAGattttcttgagttatcttagattcctTCAGACTATTTTGAGTAAGTGATACTAGCTTTGTTCCTATGGTATCTCATGGGAGACAAACATTAGCAACACCCCTAAGACTCAAATCTCGTTTTTCGTAATGAGCAACACAAAAACACAGGCAGAATTGGTGCATTCAGTTGCTCTTTAAACTAGCCTTTTTATAAATGGTCTTTGTAAAATGTTTGTTAATGGTTTTTAATAAGTATCCTAATAATAATATTAGCTATTTAAATattatggtagtgtgtgtgtatatatagtttaAATCAGTAATAAGCCTACACATTTATGAATAGATAGACAAAGGATTTCTATTGAATCTGTCAGTATTGTGGTTTAATTACCCATGTATTTTACACACACTTCTCAGTCCCTGGAGAATAGTAGATGATTGTGGTGGTGCATTCACCATGGGGACAATTGGCGGAGGGGTATTCCAGTCAATCAAGGGCTTTCGGAACGCTCCTGTGGGCTTTCAGCACAGACTAAAAGGTAGTGCCAATGCTGTGAGAATAAGAGCTCCACAGATCGGCGGTAGCTTTGCTGTGTGGGGTGGACTTTTCTCAACGATCGACTGTGGTCTGGTCCATATTCGAGGGAAAGAGGATCCCTGGAACTCTATAACTAGTGGAGCGATGACTGGGGCAGTCCTGGCTGCACGCAGTGGGCCCTTGGCTATGATGGGGTCTGCTATGATGGGGGGCATCCTACTGGCCCTGATCGAGGGCTTTGGGATCCTTCTGACCAGATACACAGCACAGCAGTTTCAGAACCCAAGTCCCTTTGTGTATGACCCCAGCCAGCTTCCTCCGAAGGATGCCAGCCAACAGCAGACTGGGTTCCAGTAGAGCCCAACTTGGTCTGGAGCTAATGAGCCTAGCTACAGCCCTGCATACTGTGACAGTCTCtgactagagaggagagaggtgctcTGTCACCTGACCACACAGCTGTCAGCAACCTCAGGGGAATGGAAATATCTAACCTAAGCCCCCATCCTCTCAATGGCAATAAGAATGTAGATGCACTTTAGTGTTATTCCTCAGGGCTAGATTACAGTTGATTTGAGTTATTTATGAATATATGTTTGTGTATACCGGGTACACCAGTGTTCCTTCTGACTAGTCCCGAATAATACACACTTTTATCAGATACATTTATGCCCAAACCCGTCATTTCATGGTGACTGTAAGAATGTTGGTGCTTTATTACCACAGCTACAGAAATAGAATGGGTAGCTGAAAATGTATAGGCATTAATACAGGCATACAAGTATGGGATGCCAAGATTTAGGATTAGAAATTCCCTCAATCTTATCAGAAGTGTCGTTCAGAAATGTCGTTCAAAACGGATGTATTTTCTCTTGCTTGTAAAATGCAATGCACTGAGGGAGGAGAACTGCACTATCatttcatttcctctcctcttttataaTTGTATGGCTTATAAGGGTCTAAATCACATCCCAAACGCACCAATGATTTGTTTCCATTTGTGAAACTCaaatagctggaatggaatgtcaTGACCAAATACAGTCACAGCTCATTTGTTCTGCTGTTTATGTCACTACCTTCATTGGATGCCTGCCACTATGCCATGCATTACTAGACATTCCCGCTATCTAAGCACTATAAGGTCTATCCACTTTGATGAACCAAAGCACTTTCttactccatctctctgtgttaTTGTGTTGAGAAAAATTTGATGGTTTTGTGACACAATGAAGATATGTTTTGTAATGTATAGAATGCTGTACAATAGTTGTTGGTTTTAATGTATTTATAATgcagaaaaataaatgtttacagTGTAATTGACTGGAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU937483 lncRNA upstream 26596 58641286 ~ 58641558 (+) True G824495
TU937475 lncRNA upstream 31327 58636573 ~ 58636827 (+) True G824487
TU936437 lncRNA upstream 129162 58537444 ~ 58538992 (+) True G823587
TU936407 lncRNA upstream 170316 58496752 ~ 58497838 (+) True G823579
TU936450 lncRNA upstream 225935 58442016 ~ 58442219 (+) True G823600
TU937518 lncRNA downstream 6442 58677693 ~ 58677980 (+) True G824523
TU937519 lncRNA downstream 6944 58678195 ~ 58678429 (+) True G824524
TU937545 lncRNA downstream 74042 58745293 ~ 58745534 (+) True G824549
TU937610 lncRNA downstream 126631 58797882 ~ 58800399 (+) True G824590
TU937618 lncRNA downstream 176194 58847445 ~ 58851453 (+) True G824598
XM_021616447.2 mRNA upstream 2223 58656277 ~ 58665931 (+) False LOC110532490
XM_036988509.1 mRNA upstream 2223 58657132 ~ 58665931 (+) True LOC110532490
XM_021616444.2 mRNA upstream 171796 58447931 ~ 58496358 (+) False LOC110532488
XM_021616442.2 mRNA upstream 171796 58456772 ~ 58496358 (+) True LOC110532488
XR_002474838.2 mRNA upstream 220293 58433121 ~ 58447861 (+) True LOC110532485
XM_021616448.2 mRNA downstream 103 58671354 ~ 58674299 (+) True LOC110532491
XM_036986959.1 mRNA downstream 13019 58684270 ~ 58720758 (+) False LOC110531219
XM_036988511.1 mRNA downstream 57347 58728598 ~ 58741270 (+) False LOC110532493
XM_036988512.1 mRNA downstream 63334 58734585 ~ 58741270 (+) True LOC110532493
XM_021616453.2 mRNA downstream 74582 58745833 ~ 58755855 (+) False plp2
TU936410 other upstream 132511 58519219 ~ 58535643 (+) True G823580
TU936293 other upstream 277584 58388671 ~ 58390570 (+) True LOC110532478
TU936255 other upstream 417847 58247114 ~ 58250307 (+) True G823459
TU936266 other upstream 423170 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 639297 58028619 ~ 58028857 (+) True G823373
TU937515 other downstream 12898 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 183594 58854845 ~ 58856699 (+) True fkb1a
TU937747 other downstream 353949 59025200 ~ 59028143 (+) True ppdpfa
TU937803 other downstream 487330 59158581 ~ 59160196 (+) False LOC118966079
TU937938 other downstream 705855 59377106 ~ 59382411 (+) True LOC110532530

Expression Profile