RNA id: TU880436


Basic Information

Item Value
RNA id TU880436
length 5746
lncRNA type read_through
GC content 0.46
exon number 3
gene id G772753
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12758490 ~ 12764721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGACCACTATTACCAATTTCATTAGCTATTAAGTAAAGTAAATCACACTTACTAAGCCCACTATTCGTGGTTGACTGTCCGGCAGGTGGAGTTGTAGTGCTCATTTGTGTAGTTTTTGGTAGCTCAGTAGTGGTTGTGAAATTAGCTAAAGTTAttgttgttgtattaggagctgtggttgttgtattagaagctgtagttgttgtaaaaggagctgtagttgttgtattagGAGCTGTAGTAGTTGTATTAGGAGATGTAGTTGTTgtattaggagctgtagttgttgtattaggagctgtagttgttgtattaggagctgtagttgttgtattaggagctgtagttgttgtattaggagctgtagttgtcgtattaggagctgtagttgtcgtattaggagctgcagttgttgtattaggagctgtagttgtcgtattaggagctgtagttgtcgtattaggagctgtagttgttgtattaggagctgtagttgttgtattaggagctgtagttgttgtattaggagctgtagttgttgtattaggagctgtagttgttgtattaggagctgtagttgtcgtattaggagctgtagttgtcgtattaggagctgcagttgttgttgtactaggagctgcagttgttgtcatagtaggtgctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagctacagttgttgtcgtagtaggagctgcagttgttgtactaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcatagtaggagctgcagtggttgttgtactaggagctgcagtggttgttgtactaggagctgcagtggttgttgtactaggagctgcagtggttgttgtactaggagctgcagttgttgttgtactAGGAGCTGGAgttgttgtcgtagtaggagctgtggttgttgtcgtagtaggagctgcagtggttgtcgtactaggagctgcagttgttgttatactaggagctgcagttgttgtcatagtaggagctgcagttgttgttgtaccaagagctgcagttgttgtactaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagctgcagtggttgttgtactaggagctgcagtggttgttgtactaggagctgcagtggttgttgtactaggagctgcagttgttgttgtactaggagctgcagttgttgtcgtagtaggagctgcagttgttgttgtagtaggagctgcagtggttgttgtactagtagctgcagtggttgttgtactaggagctgcagtggttgttgtactaggagctgcagttgttgtcgtactaggagctgcagttgttgttgtagtaggagctgcagtggttgttgtactaggagctgcagttgttgttgtactaggagctgcagttgttgtagtaggagctgcagttgttgtcgtagtaggagctgcggATGTTGTCGTAGTAGTtgctgcagtggttgttgtactaggagctgcagttgttgttatACTAGGAGCGGCAgttgttgtcgtagtaggagctgcagttgttatactaggagctgcagttgttatACTCGGAGCTGCAGTTgctgtcgtagtaggagctgcagtagtagttgtactaggagctgcagtggttgttgtactaggagctgcagttgttgttgtactaggagctgcagttgttgtactaggagctgcagttgttgttgttgtaggagctgcagttgttgtcgtagtaggatctgcagttgttgtcgtagtaggagctgcagtggttgtcgtagtaggagctgcagtggttgtcgtagcaggagctgcagtggttgtcgtactaggagctgcagttgttgttgtactaggagctgcagttgttgtcgtactaggagctgcagttgttgttgtactaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagctgcagttgttgttgtactaggagctgcagtggttgttgtactaggagctgcagttgttgtcgtaCTAGGAGCTGCAGatgttgtcgtagtaggagctgcagttgttgtcgtagtaggagcagcagtggttgttgtactaggagctgcagttgttgtcgtagtagcagctgtagttgttgtcgtagtaggagctgtagtagttgtactaggagctgcagttgttgttgtactaggagctgcagttgttgtactaggagctacagttgttgtactaggagctgcagttgttgtactaggagctgtagttgttgtactaggagctgcagttgttgttgttgttgtaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagctgcagtggttgtcgtagtaggagctgcagtggttgtcgtagcaggagctgcagtggttgtcgtactaggagctgcagttgttgttgtactAGGAGCTGCAGTGTTTGTCGtactaggagctgcagttgttgttgtactaggagctgcagttgttgtagtaggagctgcagttgtggttgtcatAGCAGTAAGTGTGGTTGTTggagtaggagctgcagttgtggttattgTAGCAGGAGCTGTTGTAGTTGTAGAAGGAActgtggttgttgtagtaggagctgcagttgtagttgtactaggagctgcagttgttgttgtactaggagctgcagttgttgtactAGGAGGTGCAgttgttgtcgtagtaggagctgcagttgttgttgtactaggagctgcagttgttgtcatagtaggagctgcagttgttgttgtactaggagctgcagttgttgtactAGGAGGTGCAgttgttgtcgtagtaggagctgcagttgttgttgtactAGGAGCTGCAGTAGTTGTACTAGGAGGTGCAgttgttgtcgtagtaggagctgcagttgttgttgtagtaggagctgcagttgttgtcgtagtaggagctgcagtgcttgtcgtagtaggagctgcagtgcttgtcgtagtaggagctgcagtggttgttgtactaagagctgcagttgttgttgtactAGGATCTGCAgttgttgtcgtagtaggagctgcagttgttgttgtactaggagctgcagttgttgtcgtagtaggagctgcagtggttgtcatAGTAGAAGCAGCAGTGGTTGTTGTACCaagagctgcagttgttgttgtactAGGATCTGCAgttgttgtcgtagtaggagctgcagttgttgttgtactaggagctgcagtggttgttgtacTAGGAGCTGTGGTGGTTGTTGtactaggagctgcagttgttgtcgtagtaggagctgcagttgttgttgtactaggagctgcagttgttgttgtactaggagctgcagttgtcgtagtaggatcTGCAGTTGTTGtactaggagctgcagttgttgtagtaggagctgagGTTGTGGTTGTCATAGCAGTAAGTGTGGTTGTTggagtaggagctgcagttgtggttattgTAGCAGGATCTGTTGTTGTAGTTGTAGAAGGAActgtggttgttgtagtaggagctgcaatTGTAGTTGtactaggagctgcagttgttgttgtactaggagctgcagttgttgttgtgctagaagctgcagttgttgttgtactaggagctgcagttgttgtactAGGAGgtgcagttgttgttgtagtaggagctgcagttgttatcgtggtaggagctgcagttgttgtcgtaGTAGGATCTGCAGTgcttgtcgtagtaggagctgcagtggttgttgtactaggagctgcagttgttgttgtactAGGATCTGCAgttgttgtcgtagtaggagctgcagttgttgtactagcagctgcagttgttgttgtactAGGATCTGCAgttgttgtcgtagtaggagctgcagtggttgtcgtagtaggagcagcagtggttgttgtactaggagctgcagtggttgttgtaccaagagctgcagttgttgttgcaCTAGTATCTGCAATTGTTGTCGTAGTAGGAGTTGCAGTTGTTGTTGTactaggagctgcagtggttgttgtacTAAGAGCTGTGGTGGTTGTTGTACTAGGAGCTGTGGTTGTTGaactaggagctgcagttgttgtcgtaGTAGGATCTGCAGTTGTTGTACTAGGAGTTGCAGTTGTTGTACTAGGAGCTGTGGTGGTTGTTGtactaggagctgcagttgttgttgtactAGGATCTGCAGTTGTTGTCGTAGTAGGATCTGCAgttgttgtcgtagtaggagctgcagtggttgtcgtagtagaAGCAGCAATTGTTGTTGTactaggagctgcagtggttgttgtacTAGGAGCTGCAAATGTTGTCGtactaggagctgcagttgttgttgtactaggagctgcactggttgttgtactaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagctgcagttgttgttgtactaggagctgcagttgttgttgtactagtagctgcagttgttgttgtactaggagctgcagttgttgtactaggagctgcagttgttgtcgcAGTAGGAGATGCAGTTGTTGTTGtactaggagctgcagttgttgtactaggagctgcagttgttgtcgtagtaggagctgcagttgttgtcgtagtaggagcttcagttgttgtcgtagtaggagcttcagttgttgtcgtagtaggagcttcagttgttgtcgtagtaggagcttcagttgttgtcgtagtaggagcttcagtggttgtcgtagtaggagttgcagtggttgttgtactaggagctgcagttgttgtagtaggagctgcggttgttgtagtaggagctgtggttgtagttgttATAGCAGGAAGTGTGGTTGTTGgagtaggagctacagttgtggttgtaGAAGGatctgtggttgttgtagtaggagctgcagttgtagttgTAGAAGGatctgtggttgttgtagtaggagctgcagttgttgctGTAGTAGGAGCCTCAGTTGTGGTTGTCATATTAGGATCTGTGGTTGTGCTTGTTACAGAGCAGAGGCTGCCTATTACTGGGACAAATATTACAATTATTAGGTAGCTTAAAAATACCTTAAGACCAGAGACCAGAAATTGGCCCTGGCTTTTCCAAAACATCTGCCCATTTTTTCCCTCAACGTCACCACACAAAAAATTGACAGGCCCATTGGTCTTAAGATGGACCAGCACATCTGGCATTTGCTGGAAATTCAATATAACTAGTCTATTTGTGTCCCGTTTCAAGAAGCTAGGCCTAATATCgcatgtcactacttcacaggagaggcatttcaacgttttttttattgttatcaaaatgcgttttttggaaTAAAAGCCTTCTGGAATATATGAACGTTCATGTGCCTTAATTTCAAACTTTTATGCCATCTGTATATACGAATACAATTCTTACaatacgagcctagttggtttagccacggaaaaaacAGGAACCTTCCTTTCAGCCATGATTGGTTGAGATAATGGATggactggacatgccgagagatgagtttgggtTTGTATTCCATGTAGCACGATTCTATTTATAACATgacctgctcagtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880390 lncRNA downstream 76307 12681896 ~ 12682183 (-) True G772710
TU880389 lncRNA downstream 81006 12677177 ~ 12677484 (-) True G772709
TU880387 lncRNA downstream 82671 12674556 ~ 12675819 (-) True G772707
TU880362 lncRNA downstream 114213 12643967 ~ 12644277 (-) True G772686
TU880341 lncRNA downstream 168725 12589407 ~ 12589765 (-) True G772665
TU880482 lncRNA upstream 72545 12837266 ~ 12838655 (-) True G772797
TU880484 lncRNA upstream 75489 12840210 ~ 12840885 (-) True G772798
TU880488 lncRNA upstream 80375 12845096 ~ 12845394 (-) True G772802
TU880489 lncRNA upstream 80810 12845531 ~ 12845754 (-) True G772803
TU880553 lncRNA upstream 175073 12939794 ~ 12942007 (-) True G772857
trnaa-ugc-29 mRNA downstream 104701 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_036987361.1 mRNA downstream 123262 12595885 ~ 12635228 (-) True LOC110531484
XM_021614686.2 mRNA downstream 174989 12566382 ~ 12583501 (-) False LOC110531482
XM_021614687.2 mRNA downstream 174989 12566382 ~ 12583501 (-) False LOC110531482
XM_021614683.2 mRNA downstream 195876 12552125 ~ 12562614 (-) True LOC110531481
XM_036987371.1 mRNA upstream 91845 12856566 ~ 12868291 (-) False LOC110531492
XM_021614696.2 mRNA upstream 91845 12856566 ~ 12876446 (-) True LOC110531492
XM_021614711.2 mRNA upstream 201412 12966133 ~ 12983100 (-) True ripk3
XM_021617078.2 mRNA upstream 247991 13012712 ~ 13014459 (-) True LOC110532921
XM_036989250.1 mRNA upstream 355276 13119997 ~ 13139049 (-) False LOC118966159
TU879101 other downstream 787136 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 869775 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 969921 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 981878 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 1056907 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 229548 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 229548 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 825532 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 932458 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1215607 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile