RNA id: TU911416


Basic Information

Item Value
RNA id TU911416
length 2291
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G800826
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 38050333 ~ 38055272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACTTTATTTATAACACAGGGGGCGCTGACGTGGAGTCGCCAACTCAGCATCTATATTACAAGGTTTATCTGCAAGGCTgcgtatgtactgtactgtatttggAAACCAAGATCGCAGTGGCACTAGAAACACACGCTTAAAACAACACACTCTTTCCCTTTTTTTTGTTCAAGTTTTTTTCCTCCCTTTTTTCATACAAAATGGTACAAACAACAATACAAAATAGTTGTGCTGTTGACAGTTTACAAAAAAAAGTATCTTACCTTGATAACTGTGCAATTATTCTTTcgggtttttttttatttttttaagcatTTTAGATTGTTTTCAATTTCATTTTTTTGTTCTCCATTTGAGTTTATGTGAGTATGGTACACACCAGAAGATCTTCTGGACCGCAACCTCGGTCATGCGGGCTGCTACACGCGTTAAAATGATCTTTATGATAACTGTTATACAATTCTTCTTCTGCCCATTATAAAAAGACACATGCAAAAAAAGCTCAAATTGTACAGTTATATGTTGCCTAACTTGATCCGATTAGCTTCAAGCAAATTACTACATTATGTACACTCAGACGTGAGCAACATCGGGGGCGACTCCAATGCGACATTAGCTGCGTCTCAAATCATATCCTGTCccttatagtgcattactttcaACCACGGCAGTGTACTATATGGAGAACAAGGGGCCATTTGAGACTCAGACATTGTCATGTTTCTGTGCGTTCCTGGTGAAAGTGAAGGCTACGTCTAGCACTGTAACTAACTTGTTGGGAGTCTCCTGCAGTTGGATCGAGTGCAGAACACGCCATGGATTGGGGAGAGCTTTCCGGATCTATGTTCCTCCGGCGAGGGTAACCGTTCAAAGGCTAACAGAAGATGACCACTTCTATCTAGGGGACAAACGGACACGGACAGACAGACTTGACTGCTTTGTGTGCAGGCCTTATGGTAAAGGGAGTGTATGCTGTAGAGTAGGGCCAAGCCGTACACACAGATACTAAATGGCTGGTCTAAAATACATCTGCAGAAGTGAAACATACTGCATTCCTCCCACTATAGCATTCTTCCTAAGATTTTGTCTCAAGGAATTTATTTGTATACTTTAGCCTCCCGCGAGCTCCTGCTTCAATATGCCAAACTAAGACGTGGATGCGCAaatccatacatccatccatACAACAGCATCCATTCACCCCAACCACAACCACCGTTGCATATTCACAAGTACAACCTTCAAACCTCCAATTCAAGCCTTCGTTTATCCAAAACCTTAATTTCACCCCTCCCTGGCTTCCCTCTCATCCCCTCATAGCGTTGGAATGGCACGGCTTCATTTGTCTCACTAATAACTCCTGGATAATGGCACATTCACTATGACAGGCAGCAGCCTATTCACGTGATGATGCTATGTAGTGCTTATGACAGCAGCCTTATGTAAAGTGGGAACATGAAGTGCCTGGGTCTCCTCTCTGTTCACTGCCACCCATGCAGGTGTATATTTGACAGACTTGAGGGACCATCAGGCAGTCATAAAACATGTCTTTCTGAATGCTCTCTGGCCTTCAGCCAGGCTGGACTCTCTCGGGTGGGGCATAGCAAGGAGGCCTTATCGGTATGGGTTGACATGCAGGGTGATGCCCAGAGAGAGTGAGTGCAAATATATATAGGAGGACGTCGTGTGATGTAATAATGACGCCAACCTTGAACAGCGACACCCACATAAACAAGTATGGCTGTGAGCGTATGAGTCTCTTTGAATCTTCAGTGAACGCAAATGGCCTTTGCGGCGATCTGAAGCTTGCGAGCAGGCTCGGTAGGCTACTCgtcaaacaacaaacaaaacaaaacacagggtGAAGAATATAAAGAGAACAAATGTACAAAACAACAGAATGTGTAAAAAAGAAAAGTTTATGTACAACATTTATATGTCGGAGATAATCATGAATCATGAACAGCAACAGctgtgcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcattgaGCTAAGCTTTAGTGAAGAGAGGAGCACTAATCCTACTTTGCGATGGCGAGTGGTAAGGTGGAAACCCTAAATACCGCTTCCTGTTTCTGTGTATGTCACCATCCAAAGGCATTGTCGGTACACAGCAGGACCAGAGGGTCAAAGTTCATACCCACTGATGCCCTGTCACTCTACATCAGGTGGGTTTGGGGTCCAACTCACTGTTATTCAACAGCCCATATATGTCCTACTCCCCCTTTCAGTGCCCTTCCTATCATTTTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU911371 lncRNA upstream 60684 37989364 ~ 37989649 (+) True G800789
TU911357 lncRNA upstream 77318 37970458 ~ 37973015 (+) True G800776
TU911303 lncRNA upstream 129966 37920109 ~ 37920367 (+) True G800727
TU911281 lncRNA upstream 142753 37907267 ~ 37907580 (+) True G800705
TU911157 lncRNA upstream 221100 37825979 ~ 37829233 (+) True G800589
TU911426 lncRNA downstream 17565 38070216 ~ 38071433 (+) False G800834
TU911429 lncRNA downstream 17565 38070216 ~ 38071433 (+) True G800834
TU911594 lncRNA downstream 281960 38334611 ~ 38337642 (+) True G800996
TU912122 lncRNA downstream 477520 38530171 ~ 38530414 (+) True G801490
TU912128 lncRNA downstream 482403 38535054 ~ 38535295 (+) True G801496
XM_036987920.1 mRNA upstream 17110 38021682 ~ 38033223 (+) False LOC110532011
XM_036987923.1 mRNA upstream 17110 38022305 ~ 38033223 (+) True LOC110532011
XM_036987921.1 mRNA upstream 19912 38021681 ~ 38030421 (+) False LOC110532011
XM_021615591.2 mRNA upstream 70504 37977424 ~ 37979829 (+) True LOC110532009
XM_021615579.2 mRNA upstream 101371 37923872 ~ 37948962 (+) True LOC110532007
XM_021615595.2 mRNA downstream 815618 38868269 ~ 38884647 (+) False LOC110532014
XM_036987925.1 mRNA downstream 815626 38868277 ~ 38884647 (+) True LOC110532014
XM_021615594.2 mRNA downstream 833973 38886624 ~ 38909718 (+) True LOC110532013
XM_021615603.2 mRNA downstream 1011499 39064150 ~ 39072385 (+) False LOC110532019
XM_036987940.1 mRNA downstream 1058704 39111355 ~ 39237408 (+) False LOC110531165
TU910348 other upstream 479922 37567245 ~ 37570411 (+) True G799858
TU910049 other upstream 1014415 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1733528 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 2678185 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 3493711 34555931 ~ 34556622 (+) True G797056
TU911427 other downstream 17565 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 735410 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 880301 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1015721 39068372 ~ 39072225 (+) True LOC110532019
TU912870 other downstream 1180414 39233065 ~ 39237261 (+) True LOC110531165

Expression Profile