RNA id: TU912414



Basic Information


Item Value
RNA id TU912414
length 294
RNA type TUCP
GC content 0.54
exon number 1
gene id G801778
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 38788061 ~ 38788354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgCATCGCCTCCTCATGGACCTCACCAGATTTGCCAATTctagctgtgagatgttaccccactcttccaccaaggcacctgaaaGTTCCAGGACAttcctggggggaatggccctagccctcaccctccaatccaacaggttccagacgtgctcaatgggattgagatccgagctcttcgctggccatggcagaacactgacatttctgccttgcaggaaatcccgcaagaacgagcagtatggctggtggcattgtcatgctggagggtcatgtcaggatgagccatATGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU912392 lncRNA upstream 5975 38755623 ~ 38782086 (+) True G801756
TU912380 lncRNA upstream 48282 38739351 ~ 38739779 (+) True G801744
TU912341 lncRNA upstream 104585 38683127 ~ 38683476 (+) True G801706
TU912290 lncRNA upstream 134691 38652533 ~ 38653370 (+) True G801657
TU912286 lncRNA upstream 137447 38650318 ~ 38650614 (+) True G801653
TU912417 lncRNA downstream 2536 38790890 ~ 38791204 (+) True G801781
TU912425 lncRNA downstream 12522 38800876 ~ 38801090 (+) True G801789
TU912460 lncRNA downstream 68694 38857048 ~ 38857447 (+) True G801822
TU912462 lncRNA downstream 70368 38858722 ~ 38858946 (+) True G801824
TU912487 lncRNA downstream 141189 38929543 ~ 38929891 (+) True G801849
XM_036987920.1 mRNA upstream 754838 38021682 ~ 38033223 (+) False LOC110532011
XM_036987923.1 mRNA upstream 754838 38022305 ~ 38033223 (+) True LOC110532011
XM_036987921.1 mRNA upstream 757640 38021681 ~ 38030421 (+) False LOC110532011
XM_021615591.2 mRNA upstream 808232 37977424 ~ 37979829 (+) True LOC110532009
XM_021615579.2 mRNA upstream 839099 37923872 ~ 37948962 (+) True LOC110532007
XM_021615595.2 mRNA downstream 79915 38868269 ~ 38884647 (+) False LOC110532014
XM_036987925.1 mRNA downstream 79923 38868277 ~ 38884647 (+) True LOC110532014
XM_021615594.2 mRNA downstream 98270 38886624 ~ 38909718 (+) True LOC110532013
XM_021615603.2 mRNA downstream 275796 39064150 ~ 39072385 (+) False LOC110532019
XM_036987940.1 mRNA downstream 323001 39111355 ~ 39237408 (+) False LOC110531165
TU911427 other upstream 716628 38070216 ~ 38071433 (+) False G800834
TU910348 other upstream 1217650 37567245 ~ 37570411 (+) True G799858
TU910049 other upstream 1752143 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 2471256 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 3415913 35364988 ~ 35372148 (+) True G797932
TU912489 other downstream 144598 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 280018 39068372 ~ 39072225 (+) True LOC110532019
TU912870 other downstream 444711 39233065 ~ 39237261 (+) True LOC110531165
TU913019 other downstream 627521 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 627521 39415875 ~ 39417460 (+) False G802324

Expression Profile