RNA id: TU912487


Basic Information

Item Value
RNA id TU912487
length 349
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G801849
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 38929543 ~ 38929891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATGTTAcctacaagaccttaaccaacaatgctttaagaagttaagaaaaaaattGAAAAGAAAATAgattaacaaataattaaacagcagcaatATAATAacaagtgaggctatatacacagggggtagtggtatagagtcaatgtgcgggggcaccggttagttgaggtaatatgtacatgtaggtagagttaaagtgactatgcatagataataaacagagagtagcagcagcgtaaaagaggggtctgggtagcctgttgattagctgttcagcagtcttatggcttgggggtagaagctgttaagaagccttttggaccttgaCTTGGCGCCAGTGATGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912462 lncRNA upstream 70597 38858722 ~ 38858946 (+) True G801824
TU912460 lncRNA upstream 72096 38857048 ~ 38857447 (+) True G801822
TU912425 lncRNA upstream 128453 38800876 ~ 38801090 (+) True G801789
TU912417 lncRNA upstream 138339 38790890 ~ 38791204 (+) True G801781
TU912392 lncRNA upstream 147457 38755623 ~ 38782086 (+) True G801756
TU912488 lncRNA downstream 996 38930887 ~ 38931221 (+) True G801850
TU912492 lncRNA downstream 25942 38955833 ~ 38956104 (+) True G801854
TU912554 lncRNA downstream 91685 39021576 ~ 39021831 (+) True G801903
TU912556 lncRNA downstream 94009 39023900 ~ 39024254 (+) True G801905
TU912558 lncRNA downstream 96024 39025915 ~ 39026386 (+) True G801907
XM_021615594.2 mRNA upstream 19825 38886624 ~ 38909718 (+) True LOC110532013
XM_021615595.2 mRNA upstream 44896 38868269 ~ 38884647 (+) False LOC110532014
XM_036987925.1 mRNA upstream 44896 38868277 ~ 38884647 (+) True LOC110532014
XM_036987920.1 mRNA upstream 896320 38021682 ~ 38033223 (+) False LOC110532011
XM_036987923.1 mRNA upstream 896320 38022305 ~ 38033223 (+) True LOC110532011
XM_021615603.2 mRNA downstream 134259 39064150 ~ 39072385 (+) False LOC110532019
XM_036987940.1 mRNA downstream 181464 39111355 ~ 39237408 (+) False LOC110531165
XM_036987942.1 mRNA downstream 181467 39111358 ~ 39237408 (+) False LOC110531165
XM_036987943.1 mRNA downstream 181472 39111363 ~ 39237408 (+) False LOC110531165
XM_036987941.1 mRNA downstream 238142 39168033 ~ 39237408 (+) False LOC110531165
TU912414 other upstream 141189 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 858110 38070216 ~ 38071433 (+) False G800834
TU910348 other upstream 1359132 37567245 ~ 37570411 (+) True G799858
TU910049 other upstream 1893625 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 2612738 36313129 ~ 36316805 (+) True G799053
TU912489 other downstream 3061 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 138481 39068372 ~ 39072225 (+) True LOC110532019
TU912870 other downstream 303174 39233065 ~ 39237261 (+) True LOC110531165
TU913019 other downstream 485984 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 485984 39415875 ~ 39417460 (+) False G802324

Expression Profile