RNA id: TU912866


Basic Information

Item Value
RNA id TU912866
length 1220
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id G802191
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39326030 ~ 39384896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaataaaaaaaatccactgCAATTCAACATCAATTTAAGTTCTTCAGCCTGTGATAACCTGACAAGTTGACATACACACCAATAACGACGCTTCTATTCATCTCCCCAGACTTACATTTTCTTGACAGTGCAAATATAATTTGGTCATTATACAAGTTTACCATCTCATATCAACAACCCACTCCCCACACAAGGGATATTTTAACTGCCATAACTCTAAACAGATGGAATATTCTTTAGGGTACAAGACAAATCCAGATGTTTACAAAGGCCTAAAACAGATAGGAATGTGTATGCTCTATTCCTGCGTAAATGTGTGATGAATAACTCAACTGCTGTTGGATCGCAAATAGTAATACAGGATTAGTCAAATAACAAAAAGTGGGGAGCAACATATCAAGTCAGATGCCTGTAATGAATTCCAGAACATTTCAAATCTAAATGAACATAACATTGATAAACTGTTTGCGACATAACAGGTGAGGAAGAAAGGGAACATGTAAGCGTAAAGGCTAAGCTACTGAAACACGGAACCGTTTCTCTGATCACTATCTATATGCCACAGGGGAGGGAGGCTCACAAGTGGGAACCAAACAGAAAATGTTCAACTGTTCTGGTACACTGCTCAACTAACTTAACACAGAACCTTGTGGGGGAGGATAAAAGAGATGTTTAATTACTTTTCATTACACTTGACAATCTCTTCACATGTATTGCTTTCTAGGTTGAGGatgactatacagtacatccgtAACAAATCATGAATACTTAATCTAATAATAGTAAAAACAGGACACGCCAAGAGTGCAGCACTGCAAATGGAAGTGGAGACTGCTACTCTGTACAACACTATGCATATCAACCTTAAGTGGACTGATTGGAAATTAGCTCTGGAGCAGAGGCTATGGATTTAAACATGGCTACCGACTCATATCTGTacagatttttttcccccagtcTTCAATTTCAAGATAGTTTGAttcttccttccatccctcttccAGGTTTGAGTTTTTTCATTCCAAATCAGGCATttTTTCATCGTCACTATCTGCAGACTCATCATCATCAGCACCATCTAGATCAGGTAGGTCATCTTCCCCTCCCATGTTGTTCATCATTTTAGCCATTGCTTCTTGTGTGTTGAACGCCATATCCCCATCTCCTACCTCTGAGAAACGATCGAAGTTGCCTAGCTCCTCATCCGAATCGTCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912985 lncRNA upstream 3193 39322616 ~ 39322837 (+) True G802292
TU912928 lncRNA upstream 66061 39258408 ~ 39259969 (+) True G802241
TU912885 lncRNA upstream 96400 39228635 ~ 39229630 (+) False LOC110531165
TU912918 lncRNA upstream 109667 39215311 ~ 39216363 (+) True G802231
TU912909 lncRNA upstream 118246 39207537 ~ 39207784 (+) True G802222
TU912875 lncRNA downstream 7858 39337906 ~ 39339194 (+) False G802195
TU912877 lncRNA downstream 7858 39337906 ~ 39338532 (+) True G802195
TU913006 lncRNA downstream 60250 39390298 ~ 39390539 (+) True G802313
TU913010 lncRNA downstream 67830 39397878 ~ 39398093 (+) True G802317
TU913028 lncRNA downstream 84677 39414725 ~ 39415149 (+) False G802325
XM_036987944.1 mRNA upstream 69404 39240179 ~ 39256626 (+) True LOC110532020
XM_036987940.1 mRNA upstream 88622 39111355 ~ 39237408 (+) False LOC110531165
XM_021615615.2 mRNA downstream 45320 39375368 ~ 39383225 (+) True LOC110532026
XM_021615616.2 mRNA downstream 70987 39401035 ~ 39411199 (+) True ddx23
XM_021615618.2 mRNA downstream 135883 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA downstream 171205 39501253 ~ 39503641 (+) False LOC110532032
XM_021615623.2 mRNA downstream 201411 39531459 ~ 39542666 (+) False g6pd
TU912870 other upstream 88769 39233065 ~ 39237261 (+) True LOC110531165
TU912578 other upstream 253805 39068372 ~ 39072225 (+) True LOC110532019
TU912489 other upstream 392162 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 537676 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 1254597 38070216 ~ 38071433 (+) False G800834
TU913019 other downstream 85827 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 85827 39415875 ~ 39417460 (+) False G802324
TU913022 other downstream 85827 39415875 ~ 39417460 (+) False G802324
TU913023 other downstream 85827 39415875 ~ 39417460 (+) False G802324
TU913024 other downstream 85827 39415875 ~ 39417460 (+) True G802324

Expression Profile