RNA id: TU912877



Basic Information


Item Value
RNA id TU912877
length 339
lncRNA type read_through
GC content 0.45
exon number 2
gene id G802195
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39337906 ~ 39339194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCGATTTACCAAGCCACATCTTTATTTCTATCTTGGGTATAAATTGTACCAACGATAGATTAAAATCAGCAACTTTTCAGAACCCTGTCGACTCCAGCAGCCTACATCGTCAACTCATAATTGCGTTGACAAtgtcgttgttgttgtttttcaggGCGCGTACAGCCTTCGCTCGCGACACGTTGGCTTGTGACATCACAAGTTCAATGTCCTTCACCTCGACCCCGGTCTCGTCAACCTATGCATTGAGACAAAACGTTAGTATATATACATTTGACAGTCAACTCGCACTGCAATTCACTATCATCTCCAGGGGAATTGGGCTTTTGGATTGGGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU912865 lncRNA upstream 3856 39327755 ~ 39334050 (+) True G802191
TU912864 lncRNA upstream 7858 39326030 ~ 39330048 (+) False G802191
TU912866 lncRNA upstream 7858 39326030 ~ 39330048 (+) False G802191
TU912985 lncRNA upstream 15069 39322616 ~ 39322837 (+) True G802292
TU912928 lncRNA upstream 77937 39258408 ~ 39259969 (+) True G802241
TU913006 lncRNA downstream 51766 39390298 ~ 39390539 (+) True G802313
TU913010 lncRNA downstream 59346 39397878 ~ 39398093 (+) True G802317
TU913028 lncRNA downstream 76193 39414725 ~ 39415149 (+) False G802325
TU913026 lncRNA downstream 76867 39415399 ~ 39415718 (+) False G802325
TU913030 lncRNA downstream 76867 39415399 ~ 39415647 (+) True G802325
XM_036987944.1 mRNA upstream 81280 39240179 ~ 39256626 (+) True LOC110532020
XM_036987940.1 mRNA upstream 100498 39111355 ~ 39237408 (+) False LOC110531165
XM_021615615.2 mRNA downstream 36836 39375368 ~ 39383225 (+) True LOC110532026
XM_021615616.2 mRNA downstream 62503 39401035 ~ 39411199 (+) True ddx23
XM_021615618.2 mRNA downstream 127399 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA downstream 162721 39501253 ~ 39503641 (+) False LOC110532032
XM_021615623.2 mRNA downstream 192927 39531459 ~ 39542666 (+) False g6pd
TU912870 other upstream 100645 39233065 ~ 39237261 (+) True LOC110531165
TU912578 other upstream 265681 39068372 ~ 39072225 (+) True LOC110532019
TU912489 other upstream 404038 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 549552 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 1266473 38070216 ~ 38071433 (+) False G800834
TU913019 other downstream 77343 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 77343 39415875 ~ 39417460 (+) False G802324
TU913022 other downstream 77343 39415875 ~ 39417460 (+) False G802324
TU913023 other downstream 77343 39415875 ~ 39417460 (+) False G802324
TU913024 other downstream 77343 39415875 ~ 39417460 (+) True G802324

Expression Profile