RNA id: TU935017


Basic Information

Item Value
RNA id TU935017
length 5921
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G822360
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56708563 ~ 56714483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTTATTTCCTATTTGTTTCTTACAGAGCTGGTAACACTTATGATAGATCTGTATTGAGTTATTTGGTTCCCTCGATAACTTTACAAGGATCCTCGATGCTCATCCACTGACGGGCCGTGGGCAGTTTGTATAGGAGCAACGTTTTGTGTCCAGTCAAGGGCTAAAGCATGCGATCCACAGTAGGCACAAGTACTGACATGAACACACGCACCACAACACTAAGACACGAAGAAACACAGCCAGAGGACACGTAATCTCATGGTCCTCTGAGGCTTAAAAAGaggatgaagagaaagagaggagaaaaaagTATTTTCGAATGCAATGTAGTATGGAAAATTAGAAGTGAAGGAAGAGTTCAAGAGAGAGGGTTGGTACTATTCTGCATGTTTTGGtagtatatatatccatgttgtAAACGCGAAGGACGACATTCCTCTGAAAATCAGTATCATTCTGGATCCAAAGGAGCCCCCAGCGAGTCCAGTTCCACAACAACAGCACATTAAAATGCTAAGACAGAAAAACAGTGAATTCATGGTGGAAAAGTTCAATCATTGTCTTTTCCGTTGGTCCTAATGCAGTTTTGCATTctaaatataatacaatagaaacacaACACTAACCTAGTGATTATTACAGTAGAAAGAGGAaacacaaacagagacaggagAACACACTGTAAGGTGGTGAGTGACCTAGGCCAACTGAAACACTCCTTAACACAGTATTGACATGGAAGTTGTATGACTTTTCTGTTatttctctactttctctctctttctgcattgttgggaagggtctGTAAGAAAACATTCCCCTGTAAGTCCACACCTTTTGTtgacgaagcatgtgacaaatccaATTTGCTTTGATATGATGCTCTAGTTTGGAGGGTATCCCTTTGAAAATCACATGGACCTTTTTCATAAAGTACTTGAATAATTCATTTAAAAAGCTTGATAGAAATAAAACAGCTAGTAGTACAAAAGAACAGTAGAATGTAGTGTGTGAATCATCGTGCTCTCAATCCATTGTTCCTTCACCGCTGAGATATAGCCTGCAGTTAGTTTCTAAAGCAGTACTACTTTGCATAAAGTAGATATATCAATTTAGGCTTTCAAAAAATAGGTAATCCTATaatataaacattttaaaccattgtaaataaaaaaacatatttgttaATTATTTTTATCACCACTTAAATGTACACTTAAGAATGGTTTATGTATTCTGGGCATGCAGATATATACGCCTGGTAAGTTGCAGTAGTACTGTGTTTTAGCACTGCAACCTCTAACTTTATAAAGGGCCTATGCTTTTTGTTCTtgtaacatacatacatacatacacacaaacacacagttgtCAGTCGTATTCCCCATATAGAGAACTGTCCAATGACCGTGGCAGTGTAAAAAGCATTGAAACAATCAACTCTTTTTAATAAAAATGTGCTATATTTGAACCTTTAATCACAGTTATTTTATCATCTAAACTGCATCCGCATCAGTGGAATTATTTGGGCTCTGAAATAGATTCAAACAGATTACTGATGATGATTTCATGGAATTGTAAATATAGATGGATATACTGGCAGTATTTTGGAAAGACACTGAAATCGTCAATTGGATTGAAGTTCCATATGTGCATCGGTTTGGTCACAGTTCAAAAGGATTGATTGTGACATTGAGAAGCAACATCAATGATCCCATTATAAAATAGTTGCAAACATCAAACAACACTATGATTATTATTTCAATAGTGTTGCTATTAGAGGAATTGTTGACTTGAAACAGCTGGTTTCCATCAAAGTGTCTAAGATTAGACTGTCGATGATTTATCTTAACTTTACTGTTTACCATGAACACAACATATGTTGATCAGACAATAATGCTGAGACTTGGCACTGTTACAAGATAGATAGATATGTCTGCCGTATCTTTGATCACAATATGATGTCATGTCTGTAAAGCCACTGTGGATGAAAATAGAGGGATCCGTACATCGCAGTCAGGGTCCCAAATGAATTGCACTCAGCCCAAGGATCACCAACAGACGAGCCTGACACTCACATTTCAATAATGTAAATGTTCCGGATGACTTCTTCAGGTATTTTCGATAACATCTTGTGAGATAAGAAGAACCATGATTCATACTATCAAAACAAGGCATATACAAATTACATCACTGGAATACATTAGCTACACATGTATAAAATAAAGACAGCTTTAACATCTTCAAAGTAGAAAACAAAATCACATCCCCTATACTAAACTCACAACTGCTCTCAGTGCTCAATATTTTGCCTCCTAGAATCTAGATGAGTACAGAGTTCTGAACAGAATGTACATGACAAACACTGACCTAGGAAGATTAagaagtgtttttttgtttttgttttttacaaatCAATAACTAGTTATACAGCAGAGCTCTAAAGAGCTAGTGCTTGAGTATTATGGCTTTAGTTTTTATCTAATTCAACTATCTGTATACACATTCACATATATTTGTGTAATTAgcactgtaaaatatatataattgcaAAGGGTGTCAGGTCATTAAACCAACGCAAAGTAAAATTCCCCCCAAAAGGTTTAATGTACAGTAGGGGACTCCAAGCTTTATGTCCAGTGTGGAGATCTGTGGATTCAGTTCTGGTGGCTCATTAGCATCCTAAATAGTAGGCTTGTAATACATGTTTGTCCAAAAATCAGGTTCATCTTTTTTTACAGTCTTTTTAACCAAATGGTGGATATGTTTCAGCAATGGCACTGATCATTGAAGAGTTCCACTTTGGAATAGTTGTATTTCTTGAACTTGGAGGCCCTCTACAATCACTGATGTTTGGCAAGAAGACCAACATAGACTTAAATCATCTCAAAGGAAACAATacgtaaataaatacatttgaaataaatGATAATTAATCCAAATGAAATCACAAGGATTTCGATAGCAAGCATGCGGCTACATTGTTATCCTACATGAACTCACACACAGTACTTGACGACAAACTTGCTTAAAAGTTTAGGCATGGACAGAATCATATtattctaatatattatgacattcTCTCCAATAACCCATtcatggaaaataaatacatatttgttTCATTTAGAAAATATACAGTGTATCTTTTTTCCTGCATTGTGTTACAGTATTAAAATGACAAATGACACCCACGTACACAAATTATTTTTGCTTTATCTCTAAAACATGCTATTCTGTACAGTATTTTGTAGAAACATGCAGTATCAACCTGTATGAACTATGTATATAGGCAAAACTACTCACCGATGGGTCGTTTGATTGCTTGCATTTAGTCTTTTCTTTAGTGTTGTTTTTTGAACATATAGAAGAAACTAAATCAAATGAAACATAAAACATAACTAATCTGACCCCTACTGGACATATACATAAAGATATGGATGTCCTATAGAGAAAAGCAATACATTAACCAACATTCACTACTGTAATTCCCAAAAGTATAAAAGTTGTCAAACTGTTAAAACATTAAACTGCTTTGCTTGTTCTTAAACACAATCGAGTACTTTTTGCCGTCCTTGAAATACGTTGCTTTGAACTATTTTGTTGTTTGGAACAAGATGGTGCACAGAGACAGTTCATGTCCCATTACATTACTAGTGTGGCTCGAAAGTCTAATGGCATTTTGCTACGACtttgacattttttaaatgtcaatTTAATTCAGTCATATGATCAGTTTTATGCTCAAATTTATCTCAAGAGAAAGTCAAAATGTAAAATCACTTATTCAGCAAAGGATCTGAGGAACAGCATTTAATTGAAATGTGTCTTATTCCCAATCAGAAGACTTTTGAATATGTGACCTGACTCAAACTCACGACATCTCATCACAAATACTCCATAGATCAAAGAACAATCTATAACCACGTAACATAGAGATATCCAGTATAGTGCAATTAGATTCAGCAGTTTGGCCATCTGTGTATAACATACACATAACGGGAACCTTCCAGATCTTATCCTTTCAATCAAACTTAACAACAACAATTGTCTCAGAGCAATCAAAGTGCATTCACAAGAAAAACAAGGTTAAAATGATCAAATAAAAACTACAAAAATAATGATTCACTCATAAATTCACTCTCTTGTTTTTTTACCAGAAATGATTCATCATAAAATAAATGGTAAATCTCTGGTTTTTGGAGAGTAGAATTAGAACAGAACATTTTGATTTAAAGTGCTTGAGGAATAAAAGTGTTTGACGTTGAAAAGAAAAGAGTGAGTAAAAAACAACACAGCTAATTGGAAGGCGTCCCTGGTAGTTGAGAATTGCTTATTTCATTACTTGGAAGGCTTGTCTCCTTTATGACTGTAAGACGGATACAGGGATTCCTTTGAATAAGTGACATCCTTGTTGTGAGTCCATGACTAATGGCAGTAGCACTGAACAGGGAGATAGATCCTAAATAGTAGAGGCATTGGAGGGGAAGGTGGTAGATTGCAGGCAGTAGAATAGACACCTGACAAACAACATTGTGTCAACCAGGGTCTAATTCAGTCCTTGGAGTTTCCACacagatattctcacagatatgCTCTCTCTTGCATGCATGTAAGTGTCTATCATGGCCCATGTTGGGAAAGCATGCAAGAGAGAAATATTTGTGTGGAGAAATATCTGTGTGGAAACTCCAAGGACTGAATGTGACCTTCCATTCAGTCCTTGGAGTttccacacatatattatttcTCTTGCATGCTTTCCCAGCATAGGACATGGTAGACACTTACAGTGGCTCATAGTCCCTTTATCCTAAACATATTTCACATCTCTACTCTGTTGACTGACAGCCACAAACGGTGTTATTGAGAGACACTCGAGAGACTCTCCTGTTGCCATTTCAGTGATAAATTTAGACTAGTCTTAGATTATGGAAAAATAAACCAATCCAGCACCAGACTGAGATGTTAAAATCATCAAAAACATTATTCTCTGATCATGTTGCGGAGCATTTTGAATAACAACCCGTTTAGAAAAAAAGGCATGAAGTTTCAGTTTTCTCTCAGTGTACCTGAGAATATGGGTGAGCAGATGAGCTAATGATCAAAAAGGCAGTGTGTTAACAGTGTGGGGTAACTGGATATTGTCTATCTCTACTCTTTACCCAACTCTAGGAATGTAGTTCAAACTAATCGTATCTAGTATGTAGTAAGTAATTAACTGGCAGGTGTGGAGCATGGTGCAACAGTACACCCAAGGAATGAACCTGCTTGTGTTTTTCCTCTATTACATGGCAGTATAAAGCATTTTAAGTATTACGCAGAATTGAAGCAACGGTGTCTCTAAGGGGAGGAGATGAAAAGGTACAAAATGAGTGAATGTGTGGTTTTACTTCCCTAATCCTCCATCACATTGGACCGCTGTTTTCACACTCTAGGCTCCTATCCTCATGACACAATGTAACTAACTGCAACCCCAATACAAACATCAATTGAGTGATCTTGTGACTGTCTCCTTGTGGaatgaatgttttattttttattattttttgatCATGTCAATTGGGATATAGGCAGGTATCTTTTGTGGTATAGGGTGTAGAATTGGTTGGTGTGTTGGTTTGGAATGTATTATTGGGAGATGTGTAGGACCAGGGGTGAGGAGGATGGGTAGGTTTGGGTATGGGTGTTAGTGGGTAGAGGAGGTTTACTTCTTGGCGTTCAGGGCTGCCAGCGAAGCATCAATCTCCTCCTCGGGCTGCAGTGGATGCCACTGGGCGATGGGGCGGCGAGGGTTGGCCAGCATGTCGGACCAGTGCTTCAGCTGGGTGCCAGTCGCCTTGCTGCCCACCCAGATCTTCCCGATTGCGTCGTTTTTACCGATCTTGTCATAATCCAGCACTGTGACCACAGCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU935009 lncRNA upstream 53748 56652527 ~ 56654815 (+) True G822354
TU935006 lncRNA upstream 56703 56650971 ~ 56651860 (+) True LOC110532435
TU934940 lncRNA upstream 129907 56578443 ~ 56578656 (+) True G822291
TU934923 lncRNA upstream 142736 56565597 ~ 56565827 (+) True G822274
TU934919 lncRNA upstream 144898 56563444 ~ 56563665 (+) True G822270
TU935019 lncRNA downstream 2647 56717130 ~ 56718162 (+) True G822362
TU935018 lncRNA downstream 7324 56721807 ~ 56729664 (+) True G822361
TU935036 lncRNA downstream 17310 56731793 ~ 56732226 (+) True G822379
TU935038 lncRNA downstream 20821 56735304 ~ 56735899 (+) True G822381
TU935039 lncRNA downstream 23581 56738064 ~ 56738387 (+) True G822382
XM_036988406.1 mRNA upstream 236 56661757 ~ 56708327 (+) False LOC110532437
XM_036988408.1 mRNA upstream 236 56661757 ~ 56708327 (+) False LOC110532437
XM_036988409.1 mRNA upstream 236 56661757 ~ 56708327 (+) False LOC110532437
XM_036988412.1 mRNA upstream 236 56661757 ~ 56708327 (+) False LOC110532437
XM_021616331.2 mRNA upstream 236 56661841 ~ 56708327 (+) False LOC110532437
XM_021616347.2 mRNA downstream 116261 56830744 ~ 56839626 (+) False LOC110532442
XM_021616348.2 mRNA downstream 117902 56832385 ~ 56839626 (+) False LOC110532442
XM_021616349.2 mRNA downstream 117902 56832385 ~ 56839626 (+) True LOC110532442
XM_036988433.1 mRNA downstream 125234 56839717 ~ 56863877 (+) True LOC110532441
XM_021616354.2 mRNA downstream 200099 56914582 ~ 56946999 (+) False LOC110532445
TU934932 other upstream 135606 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 575627 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 584378 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 644908 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 733247 55974042 ~ 55975316 (+) True G821363
TU935064 other downstream 48142 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 627918 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1314136 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1490780 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1532631 58247114 ~ 58250307 (+) True G823459

Expression Profile