RNA id: TU936255


Basic Information

Item Value
RNA id TU936255
length 2177
RNA type TUCP
GC content 0.46
exon number 2
gene id G823459
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58216176 ~ 58250307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTGTTGCTTTATTCTCCATCTCACAATAAGTTGTTCACAGGTCAACAAAATGAACTTACTTTACATACACAGAAATTGATGCAGACCATTTCGGCATATTAGGTTCTATcgacaaataaaataaatgtactaATTCATTTTGTCCAGACGTATGATGATCAGTTACATTTACTATACACCTACCTGTACAAACACATTTGTGAAAGAGTGAGAAAACGGAAGGGGGCGGGGTTTAAGGACAAAGAAATTTACAAACTACAACAAATACCAAAGAGCCTATTATTAGTTTCCCGAAAAGCTAAACAAAGCTCCATAATGATATAAAACCTTAACTACACATCTCATCACTACAACAGTGTTCAACATATTTAAAAAGGTGATTTAGTCTAAACATTAAATGACTGGAGCAAGAGGAGAACCAAGGCACTGTTTTCAACATTGGAACCCCCAATTAGCATGATGTATTGACCTTCACTAAACACAGCACGGAAACCCACCTGGACCAAGTTGATTTGAGcctgtttttttattatttattttttaattataaaACAAATGGCCAAATCACTAAGGCTACTAGATATAAAGGTGGATGTGCCCCACCGTGGATCCTGCACTGTAGGAGGCTGGCAGTGTGGTCCAGTAGGGACACTGTATTAGAAGACCCACGACCACTGCAACCCTGCTGCCAGGAGACGAGAGGGAAATTAATTAGTTAGaatccatagaaatataattaagcAGATGTCTGTTCtcgtaattctatttctatggaaccGTCCGCCTTTGAGGCCCTCCTTACTCAGGTCCTAGAAAACAGCAGTCTGCAGGGCCTTCAGTCTCAGAGCTATCTGCATAGTTTGAAATGATGCATGCCCGTCAAATATTTCCCATCTTTTTGTTAGCTAATTCATTCAACTGTGATATAAACCTGAGGTGCTGAGGCTACAGATGAATCATTTCCATCAGTGATATTGATCTCCTGACTGAAGGGCATGGCTGGTAGGCCAAAGCCAAACAGTCAGGTAAGTCACAGGACAAAGAGAAGGATTTAACAGTTACCGCCAGTAGAAGATGCAGAGCTAAAGAAATAAACCTCAAAACACCAGAGAGACAGGACTCTTCAGTGTGCATTTAGTATTTCAATTATGATTAGTAAGGCTGCTGTGTTTTAAAATGCCCATGAAACCAAAACAGCACACCTATTCCCTACCTATTGCACTAGTTTCAACCAAATCACCATgagcccaggtcaaaagtagtgcacaatatacagtagggaacatggtgccatttcagatgcagccatGGAGGTCACGCTATGCAGCAGTTGTCCAGGGGGGATGCTGCCTGACACTAGCAGAACGTTGCACGTTGCCAGGCAGACTTCGGCATGTTGCCAGGCTAAACGTCTTCACTAGTGTCAAAAAACTTGCAGCAGCATCAAAATGGAATATATTTGCATAAATATACATCAACAGCAGGACAGGGTTTTCAGTTTGAAAGAAAGGGGAAATAATACTGTGTAGGTCAGAAAAACAGTCCTTTACTTCATAACATTATAAATAAAATCAGAGTATGTTTTCTTCTTTAACTCTCCCTTCCTGGTTGCATGCAGGTAGGCATCTTGGGTCCATACAGAGGGTAGGAAGATGGAAAGGAGAAACGGAAAGGGCAGCCAGTCCACCGGGTCTGATGAGTAGAAAGGTCTGGGATGAAGAGGATGTGTTTGGAGGAAGGGAAGGCGTTTGTTTCAGGAGGTGGACATGGAGAACACGGTTCTTATGGAGGACTGGGGGGATCGTGACGACTGACTGGTTTTACCGAGGGCTGGTGTGGAGGCTGTGGGTAAGGGCTCGGAAGTGGTGGCTGGCGGTGCTGGACACACTGTTGGTGAGGACTGGGCTGGAGCGGGGACTGTTCCTGCTCCGTACGGGGCTGTTGCGCCGGGGGCTTCGGCCCGTTTTGGTGCCCAGCTCCTTGGCCCTGACGCGGCGAGGGCTGTTGCCGAGGCCGTGGGGGGACATAGGGGCCTCCAGGTCCTCCAGGCGCTGGGTCAGGGCCAGCTTCTGCTGGATGGCCATGCGGAGCAGGGAGTTCAGGGTCTTCTTCTCATCCTCCGCCGCCGCTAGCTGCCTCTGCATCTCGTCCAGCTGGGTGACATACTGGTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936131 lncRNA upstream 128348 58116974 ~ 58118766 (+) True G823347
TU936200 lncRNA upstream 152834 58093184 ~ 58094280 (+) True G823409
TU936183 lncRNA upstream 171177 58069667 ~ 58075937 (+) False G823397
TU936184 lncRNA upstream 173405 58069667 ~ 58073709 (+) True G823397
TU936162 lncRNA upstream 208156 58038759 ~ 58038958 (+) True G823378
TU936354 lncRNA downstream 84344 58334651 ~ 58334911 (+) True G823549
TU936356 lncRNA downstream 86134 58336441 ~ 58336705 (+) True G823551
TU936298 lncRNA downstream 87436 58337743 ~ 58338492 (+) True G823496
TU936357 lncRNA downstream 88187 58338494 ~ 58340182 (+) False G823552
TU936358 lncRNA downstream 88187 58338494 ~ 58339168 (+) True G823552
XM_036988473.1 mRNA upstream 226522 57984189 ~ 58020592 (+) False LOC110532463
XM_021616396.2 mRNA upstream 226522 57984203 ~ 58020592 (+) False LOC110532463
XM_036988474.1 mRNA upstream 226522 57984889 ~ 58020592 (+) False LOC110532463
XM_036988472.1 mRNA upstream 288152 57922942 ~ 57958962 (+) False LOC110532462
XR_005053471.1 mRNA upstream 883628 57363432 ~ 57363486 (+) True LOC118966205
XM_021616412.2 mRNA downstream 36138 58286445 ~ 58290128 (+) True apex2
XM_036988487.1 mRNA downstream 48466 58298773 ~ 58321350 (+) False LOC110532471
XM_021616413.2 mRNA downstream 50013 58300320 ~ 58321350 (+) False LOC110532471
XM_021616414.2 mRNA downstream 59431 58309738 ~ 58321350 (+) True LOC110532471
XM_021616416.2 mRNA downstream 71294 58321601 ~ 58331563 (+) False LOC110532474
TU936266 other upstream 2130 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 218257 58028619 ~ 58028857 (+) True G823373
TU935738 other upstream 331580 57342401 ~ 57915534 (+) False LOC110532462
TU935064 other upstream 1483574 56762625 ~ 56763540 (+) True G822404
TU934932 other upstream 1674157 56572607 ~ 56572957 (+) True G822283
TU936293 other downstream 138364 58388671 ~ 58390570 (+) True LOC110532478
TU936410 other downstream 268912 58519219 ~ 58535643 (+) True G823580
TU937506 other downstream 417847 58668154 ~ 58671251 (+) False LOC110532492
TU937515 other downstream 433842 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 604538 58854845 ~ 58856699 (+) True fkb1a

Expression Profile