RNA id: TU936410


Basic Information

Item Value
RNA id TU936410
length 4878
RNA type TUCP
GC content 0.47
exon number 2
gene id G823580
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58519219 ~ 58535643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCTTCACTGCAAGGACACTTTTTAATATGTCAGAAGCAATAAATATTCACATCTCAATTCTCTATTCTTTCAGTTTACACTTACTACATACACAAATTACATTCTTAGGATCATACTTGTATGTTTAAAATAATATCAATTAGTGCTCTGACATACAAACATTTCAGTTCTTCAATTTATTATCTAACCTTCagtctaaaataaaaataattcaatATTCAATCGGACCAAAGTCCCCAtgctcctctttctttctcaaaCACGCAGGCATGCACgctcacacgcgcacacgcacacaccttaATAACAAAATGGAAATATTTATTTCCAAAGTTATTAAGTATTTGTAATATAATATGTACATTCATGTTTATACAGTACAATCCATTCAATAAGTGCAGATATATTCATGCAAGAGGGGTCACAAAGGTACAATACAGAGGAAATTAGACAGGAAATAGCCAACACAAAGCTTCAACATTAACCACCCCCACATACTCGTATTCTGGATTTTAAAGTTAATCTGTATCTTAGTTTTAACAAGTATTGTCTAACATTTCTAACTACATCTTACCatcctaaaatgtaattattccCTTTTGTCCCTTCCTTTGTCCCTTCTCAAACCCAGCATTGTTCTAACACAGTGCaatagaaggacagagagaggaggttaaaaaGGGGGTCGacagagatgatagaggagaAGATGAGCAAACTTGTTTGATCTAATGACAAGCACATTCAGTAAGGTTGCTGGGGTGAAGGGTATTTGGGTGGTGGTGAGTTCTCTGAGGACTGGCAAGGGGGTATGTGAGGAGCGTTTTTAAAATAATGCCATTTCTGACTTTAAGACACCACGTGTGCAAAATCACAAAACTGCATTACAAAGCGTGCTTGTTCAAAGACATATACTGTCCAAACACACGCCATGTGAGAAACTCTCAACAAGACCTGATGCTTGTAAGCGAGTCTCCTGATAATAGAGAGAACATAAACGGCAGGGTCACCAATTAAATGAGGGTCATTGTACATGaccaggtcaaaggtcaaagcCCTTAAGAGGATATTTCGAAGGGGTCTGGAAAGAGTTGATTCAAAACACATAAGACCACATAGACATCATTTAAAATGGTCACCTATCTGTTAAGGTGAATTTAGAATCCAATGACCCCATTTTTAGACACTGCCACTGTAAGTtcagaagaaagggagggagatagagagggtacACAACTATATTATAACaaaaataatcataaatatgAACTAATATTTTCAACAATCAATAATAATAACTGATAATAGAAGTTATCGATGGCAATCATCATAGAGAACAAAAAGAAATCATACTTTATAACACCCTCGTTACATATCAAAAGTATGAGGGAATTAATACATGTGTATATATCCTCTGTATAATCATTTATAATCAAACATCTAATCAATCAATTATTTATATATAATTAATCACTGGATCAAAACAGTTATGTTATTAGACAATATTCATCATACTCATAGCAAGTATATATGTAACATTTATTCAACAGCAAAAAAAAGCTTTAAAACATTCAAAAATATGATTTGTAGTATCATTAATCCACACACCCCATAGGGAATGCATGTAAATCTTATGAAATTAGATGACTTCTCTTAACATGTAGAAGACCATAGAGCCTAAGACTGCTATTGAATCGTGCAATAGTCATACAAGTTTAAGACAAAGCAACATTTCTCTGAGGTCTACATTCAAAAAGGATACCTTTCAGTGATGAAGACCTGCCATGGAAATTAGCAAAGACATTAAGCTGAATAAATTATTGCAAAGTCAAGGGACATTTTTTGCAACTATCCTCAATGGCTGTTTACAATGCACAAACAACCCTGCTGGAATGTATTTAGCGTTGAAGTCTTTTTCAGCTCCAGGTGGGTGGGGTTGGTCTTACTATTGGTCAGCATTATCCTAACCTCGACGACAGAGAACCAAATCTTGGTTGCTTCCTTCATTACGAGGGACTAGATTTGTCCAATTAATAACGTTGCACAATTACATCTTGGTACCTGTGTTTAAAACAGTTTCACGCTCATGTCTTGGCAGTGTCCAGAGTTTCCAATAATACTTCAGACAGAGAAACACTGGGTTATAGGCCCTCTACTGTACATTTACTACTAGCATCCGTTCTATGGCTATAGAAatggttaattgtgtgtgtgtgatgcttttTCCTGCCTGCTGCCAACTTCAACAATCTACCTCATTGCTCCTACCTGGGACTCTCCCTTATGAGTTTGTGTGCTGAGAGCTTATAGAATACACCTGAGAAACTGCAACGGAAACTCTATACAACTGCagtatacactcagtggccagtttattaggtacaccacccgtTCACAAAAATGTATCGTTTCTACAGAGAGCGAGTCACGTGGCTGTGGTTTGCTCTATAAagtaggcagacaggcatcgaggcatttggttactgttcgattgaacagaatgggcaaaacgagtgatctgagtgactttgagcgtggtatgatcggcACGtcggatccagtatctcagaaacggcctcCCTCATGGGCTTTTCATGCACTACAGTGTCCAGgttttacagagaatggtgcgaaaACATCCAGTTAGCTGCAGTCCTCTGGGCTAAacttgttgatgagagaggtcgaaggagaatggcaagctaacagacagacaaataacggcgctgtacaacagtggtgtgtagaacggcatctcggaatgcacaactcgtcaatccttgtcacggatgggctactgcagcagacaaccacaccaggttccactcctatcagctaaaaacaagaagaagcggctacAGTgggcgatcaccaacactggacaattgaggagtggaaaaacaatGCCTGGTCTGACGAATCCCGATTCCTGTTGCGTCATGTTGATGGGAGAGTCTGGATTTAGCATAAGCAGCATGAGCCCATGgatccatcctgcctggtgtcaacggtacaggctggtggtagTGGTGTACTGTTGTggagaatgttttcctggcacacgttaggtccctttaAACTAATTGAGCAACGACTGAACGCCACAGTGTATCTGAACATTGTTGTACTgccgtccaatctgcagcaactgcgtgaTGCCAAATGTTCCCTGTGGAACAtttccgacaccttgtagaatccatgccctgaagaattcaggctgttctgaaggcaaagtggggtccgacccggtactagatgggtgtacctaataaactgaccacTGAGTGTACGTGTTATATACATGATTGTGCTAGCCTTTGCCTATACTATACACAAACATATTTGTGTGCATACATGTGGGCGTTTTTTGCTTTATGTGTGTTGATTCTGCCTGTGtgtcctgtactgtatgtgtaaagGTATGTTTGTATGTTCAGGTATATGCATGCTATCCAGCTCCAACTCTCTCTtctggtctctctgtctacatGTGTGGGAAGCGGAGATGAAAGTAGCAGAGGCGAAATAAGTTGCGTTTCTTTTTGTCACTGGCACTgttgttactgctgctgctgtcctGCTCACCTCTACAAGCCCTGGCTCTATCTCTGGCCCTAGCTCTGCCCACTTCCTCCATCGTGCCCTCTGACCTCTGCCCTCTGTGCCCCCACGTTCTGTTCCTCACACTACCGTGCTGATCCGGTTGATAGGTTTGGATTTGGAGCTGACCCCTGTGCCAGTCGCCCCAGCCCCCGTCACCTGGGGCCCCTGCTGAGGCTGCCCGGGGTGCTGGGGGGGGTGAGGGCAGAGAGGCGTAAGAGGGGTAAGGGGGATAGAAGGGGGGGGTaaaggggagtggggggggggggaggggggatggaagagagaggagggtactGGGGCTGATACTGGGCGGCGGACGTAGCGTGATGGGCGTTGACGGAGGCGGGCGGCTGCTGGTGCTGATGTTGGTGGGGCAGCGTGCCAAAAATGAAGTGAGACTGATGTGGGTGGGCGGTGGGGTGTGGCGCGGCACTGAGTGGGTGCCCGGGGTGGGTGTGGGAGTGTGCGTGGGGGTGCGGGTGGGAGTGAGACAAAGTCAGAGGAGGTTTGCTTGGCACAGCGCCTCCCCTGATAGATTGTGGGGTCTGCGTGTGGTACAGTGCGAACTGGGGGTTCTGGGAATGTTGGGAGTGAGGAGAAAGGGGGGGAGGACAGCCCACCGCTATGTTGCCGTAGCGACCCTGCATGCCATGCTGGGAAAACTGGGAGAGATGGGCCAGCTGCTGGAGCTGGGCGTGAGGGGGGCCAAAAGGAGGGCGACAGGGGAGCGCCCCTCTCTGAAGAATATGAGGGGGCACGCCCCCGCCTGGCAAGGGAGGAGGGCCAGCTTGGACGTGGTAGCGATGGTGATGGTAGTAGGGGGGAGGGGGCTGCACGACGGCCGTGTGGCAGTACTGAGCATGCAGGGCCTGGATCTTGGAAGGGCCCCCCTCTGACTGGCACAGAGATGATGGGGAGTGAGGAGGGGGCCCTCCCGTAGTGGGTGGGGGGACAGGGGCGGGGTAGGGTGGCCCCGGTGGTATAAGGGGACTTGGCGGTTTGGCGCGTTTGCTGCCGAATAGAGAGCCCAGGAAGGAGCCCGTATTGCCCCCCCCAGGGCCGCTCCCCACTCCTGCTCTCTCTACACTGCCGGGAACCCCTCCAACTCCCATCCCAGCAGCGGTCTGTTGTTGCCCCGGcccaccccccacccctgttCCGGGGCTCAGGATGGGGCGATGCGGCCGGTAGTCTTCTGTAGGGTAGCAGCCTGGGATGACGCCCGGAACCGGGTAACACTGGTGGGGCCGGGGGCTGCTAATGATGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936407 lncRNA upstream 21381 58496752 ~ 58497838 (+) True G823579
TU936450 lncRNA upstream 77000 58442016 ~ 58442219 (+) True G823600
TU936379 lncRNA upstream 105595 58410256 ~ 58413624 (+) True G823569
TU936378 lncRNA upstream 111280 58406413 ~ 58407939 (+) True LOC110532483
TU936300 lncRNA upstream 127476 58390849 ~ 58391743 (+) True G823498
TU936437 lncRNA downstream 1801 58537444 ~ 58538992 (+) True G823587
TU937475 lncRNA downstream 100930 58636573 ~ 58636827 (+) True G824487
TU937483 lncRNA downstream 105643 58641286 ~ 58641558 (+) True G824495
TU937507 lncRNA downstream 132511 58668154 ~ 58671251 (+) False LOC110532492
TU937508 lncRNA downstream 132511 58668154 ~ 58671251 (+) False LOC110532492
XM_021616444.2 mRNA upstream 22861 58447931 ~ 58496358 (+) False LOC110532488
XM_021616442.2 mRNA upstream 22861 58456772 ~ 58496358 (+) True LOC110532488
XR_002474838.2 mRNA upstream 71358 58433121 ~ 58447861 (+) True LOC110532485
XR_002474837.2 mRNA upstream 111260 58406145 ~ 58407959 (+) False LOC110532483
XM_021616424.2 mRNA upstream 129775 58385510 ~ 58389444 (+) False LOC110532478
XM_021616447.2 mRNA downstream 120634 58656277 ~ 58665931 (+) False LOC110532490
XM_036988509.1 mRNA downstream 121489 58657132 ~ 58665931 (+) True LOC110532490
XM_021616450.2 mRNA downstream 132447 58668090 ~ 58670948 (+) False LOC110532492
XM_021616449.2 mRNA downstream 132541 58668184 ~ 58670948 (+) False LOC110532492
XM_021616448.2 mRNA downstream 135711 58671354 ~ 58674299 (+) True LOC110532491
TU936293 other upstream 128649 58388671 ~ 58390570 (+) True LOC110532478
TU936255 other upstream 268912 58247114 ~ 58250307 (+) True G823459
TU936266 other upstream 274235 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 490362 58028619 ~ 58028857 (+) True G823373
TU935738 other upstream 603685 57342401 ~ 57915534 (+) False LOC110532462
TU937506 other downstream 132511 58668154 ~ 58671251 (+) False LOC110532492
TU937515 other downstream 148506 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 319202 58854845 ~ 58856699 (+) True fkb1a
TU937747 other downstream 489557 59025200 ~ 59028143 (+) True ppdpfa
TU937803 other downstream 622938 59158581 ~ 59160196 (+) False LOC118966079

Expression Profile